Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1821 ATGCCTACGCCGGTCGGAGTAGCCAAGCAATGCTTGACGCCTGACGCATCTCGAGCTCTCGACGAAGCCGTCTACGTCGCGCGCCGTCGTGGGCACCCCCAGACCACCTCGCTCCACGCCGTCTCCGCCCTGCTTTCGTTGCCGTCGTCTACCTTACGTGACGCCTGTGCTCGTGCCCGGAACTGTGCCTACTCGCCTCGGCTTCAATTCAAAGCGCTAGAGCTGTGCCTGAGCGTATCGCTCGACCGGGTCCCGTCGTCCCAACTCGCCGACGACCCGCCAGTCTCCAACTCGCTCATGGCCGCCATCAAGCGTTCTCAGGCGAGTCAGAGAAGGCAGCCAGATAATTTCCATATTTATCATCAAATCACGCAGCAGCCTTCTTCGGTTTCGTGTGTGAAGGTCGAGCTTCAACATTTGATATTATCGATTCTCGACGACCCAGTAGTGAGCCGGGTATTCGGCGAAGCTGGTTTTCGAAGCTCCGAAATTAAACTTGCTGTTCTTCGTCCTCTTCCACAGCTCCTCAGGTACTCGCGCTCCAGAGTCCCCCCCATATTCCTCTGCAATTTGACGGAGCATCCGGACCCGGGTCGCCGGAGCTTCAGTTTCCCGTTTCCTGGGTCTTTTGGAACCTGCGACGGCGGCGCTGAGAATTACAAAAGAATCGGAGATGTCCTTTGCAGGAGCAGAGGGAGGAATCCCCTGCTTCTGGGTGTATGCGCAGATGATGCTCTGCGTAGTTTCACTGAAGATGTTAATAAACAAAGAGACGGTGCTTTGCCAGCGGTGTTATCTGGACTTCACGTGATATGCATAGGAAAAGATATTTCCAAGTTTGTCTTTGAGAATTTTGATAACGAGACTATCAGTTCAAGGCTTGAGGAGATTGCTGAAATGGAAGAGCAGGGTGTAGAACCTGGTTTGGTGGTGAATTTTGGGGACCTGAAGCCTTTGGTGGACGATAATGCCTCAAACGAAGCAGTGAATCATATTGTTGCCGGATTGGCGAAGCTGTTGCAGCTTAATCATGGCAAGTTTTGGTTGATGGGAGCTGCGGCGAGCTATGAGAGCTATCTGAAATTTATGGGAAGGTTTCCATCTATTGAGAAGGATTGGGACTTGCAGCTTCTGCCCATCTCGTCTACTCGGCCTCCAGGTGAATCGTATCAGAGGCCTAAGTACAGCTTAATGGATTCATTTGTACCATTTGGTGGCTTATTTTCATCACCTTCTGATCTAAAAGATCCACTACATGGCTCATATTATTGTGTTCCCCGTTGCCTTCAATGTGGTGAAAGTTGTGTGCAAGAAGTGCTTCCAGCTTCAAATGCGAGACAGTCTACTTCGGCTGTTGATCCTTACCAATCTAATTTACCTCAATGGTTGCAGATTGCCAACCTTGGCATAACGAAAGGGTTGAATGATAAGACAAAAGAAGACAGTTTTCTTCTGGATAATAATGAATCTGGGCCTATCAAGAAATTGGATAAGAGATGCCAGCATCCACATAATACTCAGCAATGCCCTGAAGCAATTCCTTGTCATACTGTCGTCAGTTCTCAATGCTCTGATGGTAAAAATGATGATGTTGATAATCAAAGCAACAAAAATTCAGATGTATCACCTAGTGTGCACATTGATCTCAATTCAAGCATGCCTAATGAGGAGCATATGATTTCTGCTTCACAATTAAGTAGTCCTGTCCCTGTAGTTTCTGAGGCGAAGCAGGATAAAAATACTTCTAAAGCCTTAGAGATGTTCCAGAAAGCAAAAGATCTTGAGTCAGGTAACCTAAGATCCTGCGACATGTCCAATTCAAGTGTGGGTGATGGTAGCCAATTGTCTCCCACATCTGTGGCTTCTGTAACCACAGATCTAGGTATAGGAATTTACTTCTCTCCTAGAAGCAACAAATCTAAGAAACCAACTGTGGGGGGTCCAAAGGAAATTCCTAGTCCCCTTTCTTCAAACTTTAATTTAGTTAACAGGGACATCCTTATGCGTCCAGCCCAGTCTTCATCCTGCTTAAGTTCTGACCATTCTGGGCAATGTGATACTAGAAATCCTAAAATTCTTTTTGAAGCTCTTGCGAAAAAGGTCCCCTGGCAGAATGAAGCCTTACAAAGCATTGTAAAAACGATAGCTTACTGTGAATCAAGCAGGGGCAAATGCCTTGGAACAAATAGACAAGGGGGCATGTGGATGAATTTTGTAGGACCTGATAGGATTGGTAAGAAGAAAATTGCTCTTTCTCTGGCTGAGATTTTATATGGAAGCCAGGAAAGTTTTATTTTTGTGGATCTAAATTCTGAGGAAACAAATGGACATGATTTGAAATTCCGAGGAAAGACTACTCTTGATCTTTTAGTTGGGGAGTTGTGCAAAAATCCGTTGTCTGTGGTTTTCCTTGACAATGTAGACAAGGCTGATGTAATGGTTCAAAATAGTTTATCTCAAGCTATCAAGACTGGTAAGATTATAGACTCGTGTGGAAGAGAAGTTGGTGTAAACAATGCAATAATTGTGACATCTTTCTCAGTTCAACAGGATGATTGCACACCGAAGATAGAATTCTGCTATTCTGAGGAAAGAATATCAAGGACAAAAGGGGTACCAATCAAGATAAAAGTTGAGGGAGACATCAGAAGTCCATGCCTCCCTGTAGTTGAATGTTCAACAGAGGACATTCCCAATCCAATACTTGCAAATAAAAGAAAGTTGGGTAGTGACAATTTCCTTAATGGTCAGCACAAAACCTCGGAGATGGCTAAAAGGGGTCACAAAATTTCAAATTGCTTTCTAGATTTGAACATGCCAGCAGAAGAGAACGAACTACAATTCAAGGATGATGGAAACCCTGAAGGTGTCTCAACTGGAACACAAAACCCGTGGTTGCAAGATTTGTACAAACAGGTTGATGAAACGATCATCTTGAAACCGTATAATTTTGACGCACTTGCAGGTAGAGTGTTAAAAATTATCAGGAGGAGCTTTCACAAGATTCTTGGATCTGAGTGCTCTCTACAGATAGAGTCAGAGGTCATGGAACAGTTACTTGCAGCTGCATATGTCTTAGAAGGGGACATGGAAGTCCAGGATTGGGTGGAGCAAGTTCTTAGTGGAGGATTTAAAGAGATACAGAGAAGGTACAGCCTCTCTGCTCGTTCTACTGTGAAACTAACTACATGTCAGGAGCAAGTTCCTGGTGTGTGCCTTCTTCCCCCAAGGATAATTGTAGACTGA 3246 0.4504 MPTPVGVAKQCLTPDASRALDEAVYVARRRGHPQTTSLHAVSALLSLPSSTLRDACARARNCAYSPRLQFKALELCLSVSLDRVPSSQLADDPPVSNSLMAAIKRSQASQRRQPDNFHIYHQITQQPSSVSCVKVELQHLILSILDDPVVSRVFGEAGFRSSEIKLAVLRPLPQLLRYSRSRVPPIFLCNLTEHPDPGRRSFSFPFPGSFGTCDGGAENYKRIGDVLCRSRGRNPLLLGVCADDALRSFTEDVNKQRDGALPAVLSGLHVICIGKDISKFVFENFDNETISSRLEEIAEMEEQGVEPGLVVNFGDLKPLVDDNASNEAVNHIVAGLAKLLQLNHGKFWLMGAAASYESYLKFMGRFPSIEKDWDLQLLPISSTRPPGESYQRPKYSLMDSFVPFGGLFSSPSDLKDPLHGSYYCVPRCLQCGESCVQEVLPASNARQSTSAVDPYQSNLPQWLQIANLGITKGLNDKTKEDSFLLDNNESGPIKKLDKRCQHPHNTQQCPEAIPCHTVVSSQCSDGKNDDVDNQSNKNSDVSPSVHIDLNSSMPNEEHMISASQLSSPVPVVSEAKQDKNTSKALEMFQKAKDLESGNLRSCDMSNSSVGDGSQLSPTSVASVTTDLGIGIYFSPRSNKSKKPTVGGPKEIPSPLSSNFNLVNRDILMRPAQSSSCLSSDHSGQCDTRNPKILFEALAKKVPWQNEALQSIVKTIAYCESSRGKCLGTNRQGGMWMNFVGPDRIGKKKIALSLAEILYGSQESFIFVDLNSEETNGHDLKFRGKTTLDLLVGELCKNPLSVVFLDNVDKADVMVQNSLSQAIKTGKIIDSCGREVGVNNAIIVTSFSVQQDDCTPKIEFCYSEERISRTKGVPIKIKVEGDIRSPCLPVVECSTEDIPNPILANKRKLGSDNFLNGQHKTSEMAKRGHKISNCFLDLNMPAEENELQFKDDGNPEGVSTGTQNPWLQDLYKQVDETIILKPYNFDALAGRVLKIIRRSFHKILGSECSLQIESEVMEQLLAAAYVLEGDMEVQDWVEQVLSGGFKEIQRRYSLSARSTVKLTTCQEQVPGVCLLPPRIIVD 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1821 1081 SUPERFAMILY Double Clp-N motif 12 117 IPR036628 -
Prci2g1821 1081 Gene3D - 10 170 IPR036628 -
Prci2g1821 1081 Pfam AAA domain (Cdc48 subfamily) 737 849 IPR003959 GO:0005524|GO:0016887
Prci2g1821 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 848 IPR027417 -
Prci2g1821 1081 MobiDBLite consensus disorder prediction 524 551 - -
Prci2g1821 1081 Gene3D - 671 880 IPR027417 -
Prci2g1821 1081 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 3 1046 - -
Prci2g1821 1081 ProSiteProfiles Clp repeat (R) domain profile. 7 174 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1821 Prci-Chr2 13428110 13433792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1821 - - gmx:100786125 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1821 2 13428110 13433792 Prci2g1821 2 13428110 13433792 CCT
Prci2g1821 2 13428110 13433792 Prci2g1821 2 13428110 13433792 ECH
Prci3g2795 3 39970307 39973952 Prci2g1821 2 13428110 13433792 ECH
Prci8g0813 8 5231502 5237009 Prci2g1821 2 13428110 13433792 ECH
Prci2g3005 2 37570826 37575713 Prci2g1821 2 13428110 13433792 ECH
Prci2g1821 2 13428110 13433792 Prci8g0813 8 5231502 5237009 ECH
Prci2g1821 2 13428110 13433792 Prci2g3005 2 37570826 37575713 ECH