Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3005 ATGCCGACGCCGGTCAACGCAGCCAGGCAATGTTTGACGGAGGAAGCCGCGCGTGCTCTTGACGATGCGGTGGCAGTTGCTCGTCGCCGCAGCCACGCGCAGACCACCTCGCTTCACGTTGTCTCTGCTTTGCTCGCCTTGCCGTCGTCCAAGCTTCGGGAAGCTTGCACGCGCGCCGGGAGCTCCCCCTACTCGCCGCGTCTCCAGTTACGAGCTCTAGAGCTGTCCGTCGGCGTCTCCCTGGACCGGTTGCCTACTTCCAAAGCACTCGAGGAAGATCCTCCTGTGTCGAATTCTCTCATGGCGGCCATCAAACGGTCTCAAGCTAACCAGAGGAGGCATCCGGAGAGCTTCCATTTGTTTCAGATGCATATTCTGCAGAATCAACAGCAGCCAACGGCCTCACTCTTGAAAGTCGAACTCAAGCACTTTGTCTTGTCAATTCTCGATGACCCAATTGTGAGTAGGGTTTTTGGCGAAGCGGGTTTTCGGAGCTGTGATATCAAGCTCTCGTTGCTTCAACCGCCGGTGACACAGACTTCTCGGTTTCCCTGGAGCCGGTGCCCGCCCATTTTCTCATGCAATTTGCCTGGTTCCGAATCGGGTTCGCCCAGTTTCAAGTTTCCTTTCGTGGGAAATTCTGGATACGAAGGCGTGGATGAGAATTGTAGAAGAATTGGGGAGGTTCTTGTTAGAAAGACGAGAAGAAACCCCTTGTTGATGGGCATTTACGCGAAAAGTGCTCTTCGGAGTTTTACAGAATCGGTACAGAAAAGTCGAGAGGGAGTGTTGCCAGCTCAAATAGCTGGGTTGAATGTAGTCAGCATTGAGAAGGATATTTCTGAGATTCTTGATGAAGGTGGCAGTGAAGAGAAGATGGGTTTGAAATTTAAGGAATTGAGTCGCTCATTGGAGCAATACTCTGGTCCAGGTATCGCCGTGAACTTCGGAGAGCTTGACGTGTTCGTGCGCGAGGGCGTGCCTCATGGTGCTGCTAGCTTTGTTGTTTCACAATTGACAAGCTTATTGGGCGTTCATGGTGAGAAAATTTGGGTGGTGGGAATAGCTGGAACCTCAGATGTATATTCTAAGTTTGTAGCTCTGTTTCCAACTATAGAAAAGGATTGGGATCTACATCTACTAACTATCACATCTGCCACCCCTTCAATGGAAGGACTCTACCCTAAGTCCAGCTTGATGGGGTCCTTTGTTCCTTTTGGTGGGTTCTTCTCTTCACCTTCTGAATTAAAAAATCCGCTAAGCTGTACAAATCAAAGTTTTATGCGATGTCACTCCTGCAATCAAAAGTATGAACAAGAAGTCGCTGATATTCTAAAAGTAAGTCCGGCAACTTTGGCATCTGGTTACCCCACAAATTTCCCTTGGTCACAAAAGGCTAGTGTGGAGACAGATCAAGGATTGGATGTGGCAAAGAGTAATGAAGAAAATCCAGGTTTGAGTGCCAAGATCTTCGGGTTGCAAAAGAAATGGAGTGACTTTTGTGAAAGACTTCATCAAACCCAGTCAATACCTGAATTTGGTACTTCCCAAACAATGTCCAAAGTACCAGTCCTTGGGGGCTTTCCATTCAGTTCAAGTTTAAAAGAAAGTAGCAGCAAGCTTCCATCTTTTAATGAAAGTCAACATTCTCATGATGTTAATGTTCGTAGTTCACCTGACCAGGCAGCAAAAGTTTCAAAGATTCGGCATACTGATAAGCTGAGTCCCTGGATTAACCCTTCCTCTATGGCCAATACTGTGCTTGAGGGCAGATCATCTTCTTCCTTTACTTCCGTGACCACAGATCTGGGATTGGGGACAATATATGCATCGGCTGCTCAGGAGCCAAATTCCCGGGAACTTCAAAATCATAAAGAGCGCCTTCAGCTTTTGGATGATAATAATTTACACCAAAATGCTGGTCCCAGTTTGGAAGGGAAGTTTAAATCAGTAGATTTCAAGTCTCTTAGTCAAGTTCTCACTGAGACGGTTGGTTGGCAAGAAGAGGCCATATCTGCTATCATTCAAACCTTGTCCCTTTGTAACTCTCGTGGAGGAAAGCATCATGGCCAGCGTGTTAGAACAGACATTTGGTTTGCTTTCCTCGGACCTGATAGAGTGGGAAAGAAGAAAATTGCTTCAATACTTGCGAAGACAATATTTGGAAACACAGGAAGTCTGATCTCTTTGGATTTGAATTCCCAGGACAAGGCTTACTCACTAGACTCAATATTTGAAAGCCAGAATTCAAATCATTACGACATCAGGAGGAAAACAGACGTGGGCTTTATTGCTGGGGAGTTGAGTAAGAAACCCCACGCAGTTGTGTTTCTTGAAAATGTAGATAAAGCTGATATTTTGGTGCAGAATAGTTTGTTTCAGGCACTAAGAACTGGTAAATTTCCAGACTCGCATGGGAGGGAAATCAGCATTCATAACGCAATCTTTATTGTGAACTCAACTGTCTCTAAATGTAATGGCACTTCCCTTTCGGAGAAGGAGCCTACAATGTTTCCTGAGGAAAGAATCGTTGAAGCCAAAAGATTTCAAATGCAATTACTATTGAGAGAAATTTCTGTGGATGCCCCAGGGATCTGTGGCCCAAATGTTATTGTTACACCAAGCAAAGGGTCCTCTAAACAGACATTTCTGAACAAAAGAAAACAGGTCGAAATCAGTGACAACAAAGAGTGGGGCACAACAAGCAAGATACAGAAACAAGTCCAAGATGCATCAAGATCCTATTTGGATCTAAATATGCCTGTAGAGGAGTTTGAAGATGACATGGATCACAATGACAGTGTGGGTGAATCCAAAATTGAAGGCTCTCAATCTCAAGCCTGGTTGAATGATTTCTGTGATCAAACTGATGAAAAAGTGGTTTTCAAGCCACTAAATTTTGATGTGCTTGCCGAGAAAATAATGCAAAGCATCAGCACACAGTTTGAGAGGACATTCGGATCACAGTTTCTGCTGGAAATTGAGTATGAAGTGATGACACAAATGCTTGCAGCTGCTTGGTTATCAGACAAGGAAAATGCAGTGGAGGATTGGATTGAACATGTGCTTGGCAAAAGCTTCAATGAAGGCAAGCACAAATATCGCCCTTCAACAAAGTCTGCTATGAAACTAGTTTCCTGTGAAGGCATTCTTGTGGAAGAGCAAGTTCCTGGAGTGTGCCTTCCAGCTAGAATTAACTTCAACTAA 3207 0.4509 MPTPVNAARQCLTEEAARALDDAVAVARRRSHAQTTSLHVVSALLALPSSKLREACTRAGSSPYSPRLQLRALELSVGVSLDRLPTSKALEEDPPVSNSLMAAIKRSQANQRRHPESFHLFQMHILQNQQQPTASLLKVELKHFVLSILDDPIVSRVFGEAGFRSCDIKLSLLQPPVTQTSRFPWSRCPPIFSCNLPGSESGSPSFKFPFVGNSGYEGVDENCRRIGEVLVRKTRRNPLLMGIYAKSALRSFTESVQKSREGVLPAQIAGLNVVSIEKDISEILDEGGSEEKMGLKFKELSRSLEQYSGPGIAVNFGELDVFVREGVPHGAASFVVSQLTSLLGVHGEKIWVVGIAGTSDVYSKFVALFPTIEKDWDLHLLTITSATPSMEGLYPKSSLMGSFVPFGGFFSSPSELKNPLSCTNQSFMRCHSCNQKYEQEVADILKVSPATLASGYPTNFPWSQKASVETDQGLDVAKSNEENPGLSAKIFGLQKKWSDFCERLHQTQSIPEFGTSQTMSKVPVLGGFPFSSSLKESSSKLPSFNESQHSHDVNVRSSPDQAAKVSKIRHTDKLSPWINPSSMANTVLEGRSSSSFTSVTTDLGLGTIYASAAQEPNSRELQNHKERLQLLDDNNLHQNAGPSLEGKFKSVDFKSLSQVLTETVGWQEEAISAIIQTLSLCNSRGGKHHGQRVRTDIWFAFLGPDRVGKKKIASILAKTIFGNTGSLISLDLNSQDKAYSLDSIFESQNSNHYDIRRKTDVGFIAGELSKKPHAVVFLENVDKADILVQNSLFQALRTGKFPDSHGREISIHNAIFIVNSTVSKCNGTSLSEKEPTMFPEERIVEAKRFQMQLLLREISVDAPGICGPNVIVTPSKGSSKQTFLNKRKQVEISDNKEWGTTSKIQKQVQDASRSYLDLNMPVEEFEDDMDHNDSVGESKIEGSQSQAWLNDFCDQTDEKVVFKPLNFDVLAEKIMQSISTQFERTFGSQFLLEIEYEVMTQMLAAAWLSDKENAVEDWIEHVLGKSFNEGKHKYRPSTKSAMKLVSCEGILVEEQVPGVCLPARINFN 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3005 1068 CDD RecA-like_ClpB_Hsp104-like 652 820 - -
Prci2g3005 1068 MobiDBLite consensus disorder prediction 539 561 - -
Prci2g3005 1068 Gene3D - 10 174 IPR036628 -
Prci2g3005 1068 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Prci2g3005 1068 Gene3D - 643 860 IPR027417 -
Prci2g3005 1068 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1031 - -
Prci2g3005 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 822 IPR027417 -
Prci2g3005 1068 ProSiteProfiles Clp repeat (R) domain profile. 8 180 IPR004176 -
Prci2g3005 1068 Pfam AAA domain (Cdc48 subfamily) 698 825 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3005 Prci-Chr2 37570826 37575713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3005 - - pcin:129303532 2070.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0813 8 5231502 5237009 Prci2g3005 2 37570826 37575713 CCT
Prci2g3005 2 37570826 37575713 Prci2g3005 2 37570826 37575713 ECH
Prci2g3005 2 37570826 37575713 Prci2g1821 2 13428110 13433792 ECH
Prci8g0813 8 5231502 5237009 Prci2g3005 2 37570826 37575713 ECH
Prci2g1821 2 13428110 13433792 Prci2g3005 2 37570826 37575713 ECH
Prci3g2795 3 39970307 39973952 Prci2g3005 2 37570826 37575713 ECH