Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02171 ATGGCCACTCATGACATGGATCCTGATGTTGTCCGCTGGGGTCTTCATCTTCTAGATGTTTGCACACTTTCCCATCATGGTTCGCCTAGTATCCTTACCCACTATGATCCTGATTTTAGTCGAGTTGAATATGTCACAGAAGGCTTCTGTCAGCACGAGTATGTGGAGAATGACGAGGCTGTTGCAAGAGCTTATCAAGAAGAATTATCACAACTTGACTCCATGGGGGCTTCTGGGATACCAAATTATCAGAATGAGGGAATGCAAGGAACTGTCTATACACAAGATTGGTCTCATTCTTCAAATGGAAACTATAATTATGGAAATGAGTCTCGTCAGAACTCTGTAGATGAGTCATCGTACAATATGAAAGATGTGGAGAATTATGGTCGAAGTGAAAGGGGAAATGATATGCATGAAATAAATGCTTTTGGTTCCTCTAGGTCAGGAGAGGTACCTGTTACCAGAGATGATGTCTGGGATTCATTGGAAATATCAGATGAATCTTCTCTTGATGGCGAGGTTGGCAAAAGATTATACCAGATGGTTCCCATCCCTCATATTCCTAAAACCAATGAAAAAATACCGTCTGATGATGAAGAAACATCTGATCATCAAAGGCTTCTAGACAGATTGCAGTTATATGATCTAATTGAGAATAAGGTTCAAGGAGATGGTAACTGCCAGTTCCGTTCTTTGTCAGACCAACTCTATCGATCTCCAGACCACCACCAATTTGTGCGGGAGCAGATTATTCAACAGCTCAAATCTTCCCCAGATCTATATGCTGGTTATGTTCCCATGGGTTATAGTGATTATTTGAAGAAGATGAGCAAGAGTGGTGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGTATGGTGTCAAAATTCTTGTTATTACATCTTTTAAGGACACGTGTTACATTGAGATTCTTCCACAGATACAGAAGTCTGGAAGAGTGATATTTCTGAGCTTTTGGGCAGAGGTGCATTACAACTCAATCTATCCAGAAGGAGATTTGCCCTCATTTCAGACAAGGAAAAAGAAGAAATGGTGGAATTTCGGTGTATAG 1083 0.4109 MATHDMDPDVVRWGLHLLDVCTLSHHGSPSILTHYDPDFSRVEYVTEGFCQHEYVENDEAVARAYQEELSQLDSMGASGIPNYQNEGMQGTVYTQDWSHSSNGNYNYGNESRQNSVDESSYNMKDVENYGRSERGNDMHEINAFGSSRSGEVPVTRDDVWDSLEISDESSLDGEVGKRLYQMVPIPHIPKTNEKIPSDDEETSDHQRLLDRLQLYDLIENKVQGDGNCQFRSLSDQLYRSPDHHQFVREQIIQQLKSSPDLYAGYVPMGYSDYLKKMSKSGEWGDHVTLQAAADWYGVKILVITSFKDTCYIEILPQIQKSGRVIFLSFWAEVHYNSIYPEGDLPSFQTRKKKKWWNFGV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02171 360 Pfam OTU-like cysteine protease 223 309 IPR003323 -
Phco6g02171 360 CDD OTU_plant_OTU9-like 208 339 - -
Phco6g02171 360 Gene3D - 197 344 - -
Phco6g02171 360 ProSiteProfiles OTU domain profile. 217 341 IPR003323 -
Phco6g02171 360 FunFam OTU domain-containing protein 199 345 - -
Phco6g02171 360 PANTHER OTU DOMAIN CONTAINING PROTEIN 56 342 - -
Phco6g02171 360 SUPERFAMILY Cysteine proteinases 201 341 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02171 Phco-Chr6 42710650 42717505 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02042 2 51141187 51149773 Phco6g02171 6 42710650 42717505 ECH
Phco6g00681 6 6801513 6804600 Phco6g02171 6 42710650 42717505 ECH
Phco6g02171 6 42710650 42717505 Phco6g02171 6 42710650 42717505 ECH
Phco5g01201 5 45635653 45637153 Phco6g02171 6 42710650 42717505 PCT