Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01201 ATGAACGATCTAATGACCAAGTCCTTCACCAGCTATGTGGATTTAAAGAAAGCTGCGATGAAAGACGTTGATTTGGAAGCGGGTATGGCTGTTCCTCCCGATGTGGAACTAACTTCTTCCATAACCCACTTGGACACTGACATGGGTCTCTTCTTGGAAGAGGCTGAGAAGGTGAAGACTGAAATGGGGTCCCTCAGAGACATCCTCGGCAGCTTGCAGCAGGCCAACGAGGAGAGCAAGTCTCTGCACAAGGCTGAGGCGCTCAAGGCTCTCAGGGGCAGGATCAATGCCGACATTGTAGCAGTCCTAAAGAAGGCCAGGGTAATCCGGACCCAGCTCGAGGAGATGGACCGGGCCAACGCCGCCAACCGGAGGCTCTCCGGTCTCAAGGACGGCACGCCGGCCATCTACCGGACCCGGATCGCCGTTACCAATGGGCTGAGGAAGAAGCTGAAGGAGCTGATGATGGAGTTTCAGGGATTGAGGCAGAGGATGATGAGTGAGTACAAGGATACTGTGGGGAGAAGGTACTTCACAGTGACTGGGGAGCACCCAGATGAGGAGGTGATTGAGAAGATCATTGCCAATGGTAATGAGGAAGAGGTTTTGGGGAAGGCCATTCAGGAGCATGGGAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTGGAAAAGAGTTTGCTGGAGCTACACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCACGTGTTGCACGCTTCACACTATGTTAAGGATGGGAACAAGAATCTGCAGAGTGCAAAGCATTACCAGAAGAGCAGCAGGAAGTGGATGTGTATTGGAATCATACTGCTGCTCATTCTTATTCTGGTTATTGTTATTCCTGTTGCCACCAGTTTAAGCAGTTCTTGA 954 0.5126 MNDLMTKSFTSYVDLKKAAMKDVDLEAGMAVPPDVELTSSITHLDTDMGLFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEALKALRGRINADIVAVLKKARVIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEHPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGNKNLQSAKHYQKSSRKWMCIGIILLLILILVIVIPVATSLSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01201 317 Pfam SNARE domain 256 307 IPR000727 -
Phco5g01201 317 CDD SNARE_syntaxin1-like 218 279 - -
Phco5g01201 317 Gene3D - 44 173 - -
Phco5g01201 317 SUPERFAMILY t-snare proteins 46 274 IPR010989 GO:0016020|GO:0016192
Phco5g01201 317 FunFam Syntaxin 132 212 312 - -
Phco5g01201 317 Coils Coil 144 164 - -
Phco5g01201 317 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Phco5g01201 317 ProSitePatterns Syntaxin / epimorphin family signature. 225 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco5g01201 317 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 176 - -
Phco5g01201 317 SMART tSNARE_6 214 281 IPR000727 -
Phco5g01201 317 PANTHER SYNTAXIN 65 303 IPR045242 -
Phco5g01201 317 CDD SynN 48 206 IPR006011 GO:0016020
Phco5g01201 317 Gene3D - 215 314 - -
Phco5g01201 317 Pfam Syntaxin 51 254 IPR006011 GO:0016020
Phco5g01201 317 SMART SynN_4 43 170 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01201 Phco-Chr5 45635653 45637153 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01201 5 45635653 45637153 Phco6g02171 6 42710650 42717505 PCT