Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01402 ATGGCAACAGAGACGTTTCTATTCACCTCTGAATCCGTCAATGAGGGCCACCCTGACAAGCTGTGTGACCAGATCTCCGACGCAGTGCTTGATGCCTGCCTTGAACAGGATCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTCTTCGGAGAGATTACAACCAAAGGCAACATAGACTATGAGAAGATTGTTCGCGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTAGGTCTTGATGCTGATAAATGCAAGGTGTTGGTGAACATTGAGCAGCAGAGTCCTGATATTGCTCAGGGTGTGCATGGCCACTTCACCAAGCGCCCAGAAGAAGTTGGTGCTGGTGACCAGGGTCATATGTTTGGTTATGCCACTGATGAAACCCCTGAATACATGCCACTGAGCCATGTCCTTGCAACCAAACTAGGAGCTCGCCTTACTGAGGTTAGGAAGAATGGAACCTGTGCTTGGTTGAGACCAGATGGTAAGACACAAGTGACAGTAGAGTACTACAATGAGAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTCCTCATTTCCACCCAGCATGACGAGACTGTCACTAATGAACAAATTGCTAAGGATCTTAAGGAGCATGTTATCGAGCCTGTGATTCCTGAGAAGTACCTGGATGACAAGACCATCTTCCACCTTAACCCTTCTGGTAGATTTGTCATTGGTGGCCCTCATGGTGATGCTGGTCTCACTGGGAGAAAGATTATCATTGATACTTATGGTGGGTGGGGTGCACATGGAGGCGGTGCTTTCTCTGGAAAGGACCCTACTAAGGTTGATAGAAGTGGTGCCTATGTTGCAAGACAAGCAGCAAAGAGTATTGTAGCAAGTGGACTTGCACGCAGGTGCATTGTTCAAGTCTCCTATGCAATTGGTGTTCCAGAACCATTGTCAGTCTTTATTGACAGTTATGGAACTGGAAAGATTCCAGACAAGGAGATTCTTCAACTTGTGAAGGAGAATTTTGACTTCAGGCCTGGAATGATCACCATTAACTTGGATCTCAAGAGGGGTGGCTACAGGTTCCTCAAGACAGCTGCTTATGGACACTTTGGAAGGGAGGACCCTGACTTCACCTGGGAACTTGTCAAGCCACTCAAGTGGGAGAAGCCTCAAAATTAA 1185 0.4743 MATETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNEQIAKDLKEHVIEPVIPEKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFIDSYGTGKIPDKEILQLVKENFDFRPGMITINLDLKRGGYRFLKTAAYGHFGREDPDFTWELVKPLKWEKPQN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01402 394 CDD S-AdoMet_synt 7 382 - -
Phco6g01402 394 SUPERFAMILY S-adenosylmethionine synthetase 242 390 IPR022636 GO:0004478|GO:0006556
Phco6g01402 394 PIRSF MAT 1 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco6g01402 394 FunFam S-adenosylmethionine synthase 264 382 - -
Phco6g01402 394 ProSitePatterns S-adenosylmethionine synthase signature 2. 268 276 IPR022631 GO:0004478|GO:0006556
Phco6g01402 394 ProSitePatterns S-adenosylmethionine synthase signature 1. 121 131 IPR022631 GO:0004478|GO:0006556
Phco6g01402 394 FunFam S-adenosylmethionine synthase 139 243 - -
Phco6g01402 394 SUPERFAMILY S-adenosylmethionine synthetase 5 111 IPR022636 GO:0004478|GO:0006556
Phco6g01402 394 FunFam S-adenosylmethionine synthase 119 138 - -
Phco6g01402 394 Gene3D - 13 281 - -
Phco6g01402 394 Pfam S-adenosylmethionine synthetase, central domain 119 240 IPR022629 GO:0004478|GO:0006556
Phco6g01402 394 SUPERFAMILY S-adenosylmethionine synthetase 117 241 IPR022636 GO:0004478|GO:0006556
Phco6g01402 394 Pfam S-adenosylmethionine synthetase, C-terminal domain 242 382 IPR022630 GO:0004478|GO:0006556
Phco6g01402 394 Gene3D - 6 244 - -
Phco6g01402 394 Pfam S-adenosylmethionine synthetase, N-terminal domain 6 103 IPR022628 GO:0004478|GO:0006556
Phco6g01402 394 NCBIfam methionine adenosyltransferase 7 387 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco6g01402 394 Gene3D - 119 382 - -
Phco6g01402 394 Hamap S-adenosylmethionine synthase [metK]. 4 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco6g01402 394 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 2 391 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco6g01402 394 FunFam S-adenosylmethionine synthetase 1 13 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01402 Phco-Chr6 14196503 14197687 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02551 2 55371940 55374315 Phco6g01402 6 14196503 14197687 ECH
Phco6g01402 6 14196503 14197687 Phco6g01402 6 14196503 14197687 ECH
Phco8g02075 8 22100957 22103214 Phco6g01402 6 14196503 14197687 ECH
Phco2g02486 2 54860088 54861119 Phco6g01402 6 14196503 14197687 PCT
Phco6g01402 6 14196503 14197687 Phco2g02488 2 54869483 54870514 PCT