Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02551 ATGCATTTTAAGGAAAAGACTTCACTCAAACTAAACCTGCTAGGAGTTGAGGATTGGTGCCCTCTTCACTCTCTATATTCTGCAGTGTGTGAAGAGTTCTCACTTCGATTTCTCTCAGAACTTGGGAGAATGGATACCTTCTTGTTCACTTCTGAGTCGGTGAATGAGGGTCACCCTGACAAGCTTTGTGACCAAATTTCTGATGCAGTGCTTGATGCCTGTCTGGAGCAAGATCCAGAGAGCAAGGTTGCCTGTGAAACATGCACCAAGACCAACTTGGTCATGGTGTTCGGAGAGATCACAACTAAGGCCAATGTAGACTATGAGAAGATTGTACGCGACACTTGTCGTTCTATAGGCTTTGTGTCCGATGATGTTGGTCTTGATGCTGACAATTGCAAGGTGCTGGTCTACCTGGAACAACAAAGCCCTGATATTGCTCAGGGAGTCCATGGCCACCTCACCAAGCAACCCGAGGAGATAGGTGCTGGTGATCAGGGCCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTTATGCCTCTCAGCCATGTCCTTGCAACCAAGCTCGGTGCTCGCCTCACCGAAGTGCGCAAGAATGGTACATGCACATGGTTAAGACCTGATGGAAAAACCCAAGTTACTGTGGAGTATTACAATGACAATGGTGTTATGATCCCAGTTCGCGTCCACACTGTCCTAATTTCAACCCAGCACGATGAAACTGTTACCAATGATGAGATTGCTGCTGATCTCAAAGAACATGTTATCAAGCCTGTTATACCAGAGAAGTACTTGGATGAGAAGACCATTTTCCATCTCAATCCATCAGGCCGGTTTGTCATTGGTGGTCCTCATGGAGATGCCGGTCTCACAGGGCGCAAAATCATCATTGACACGTACGGTGGTTGGGGAGCTCATGGTGGGGGTGCCTTCTCTGGGAAGGATCCCACCAAGGTAGACAGAAGTGGAGCCTATATTGCTAGACAGGCTGCAAAGAGCATTGTGGCTAGTGGTCTTGCTAGAAGGTGCCTTGTGCAAATTTCATATGCAATTGGTGTTCCTGACCCCTTATCAGTGTTTGTTGACACTTACGGGACTGGAAAGATTCCAGACAAGGAGATTCTGAAGATTGTGAAGGAAAATTTTGATTTCAGGCCTGGAATGATTTCCATTAGTTTGGACCTCAAAAGGGGTGGAAATGGAAGGTTCTTGAAAACTGCTGCTTATGGTCACTTTGGAAGAGAGGACACTGACTTCACCTGGGAGGTGGTGAAGTCTCTCAAATGGGAGAAGCCCCAGGAGTAA 1311 0.4714 MHFKEKTSLKLNLLGVEDWCPLHSLYSAVCEEFSLRFLSELGRMDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRSIGFVSDDVGLDADNCKVLVYLEQQSPDIAQGVHGHLTKQPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCTWLRPDGKTQVTVEYYNDNGVMIPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGLARRCLVQISYAIGVPDPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMISISLDLKRGGNGRFLKTAAYGHFGREDTDFTWEVVKSLKWEKPQE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02551 436 ProSitePatterns S-adenosylmethionine synthase signature 1. 162 172 IPR022631 GO:0004478|GO:0006556
Phco2g02551 436 SUPERFAMILY S-adenosylmethionine synthetase 158 282 IPR022636 GO:0004478|GO:0006556
Phco2g02551 436 FunFam S-adenosylmethionine synthase 305 424 - -
Phco2g02551 436 NCBIfam methionine adenosyltransferase 48 430 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco2g02551 436 FunFam S-adenosylmethionine synthase 54 170 - -
Phco2g02551 436 Pfam S-adenosylmethionine synthetase, central domain 160 281 IPR022629 GO:0004478|GO:0006556
Phco2g02551 436 SUPERFAMILY S-adenosylmethionine synthetase 46 152 IPR022636 GO:0004478|GO:0006556
Phco2g02551 436 Gene3D - 47 285 - -
Phco2g02551 436 Gene3D - 54 322 - -
Phco2g02551 436 Pfam S-adenosylmethionine synthetase, N-terminal domain 47 144 IPR022628 GO:0004478|GO:0006556
Phco2g02551 436 Hamap S-adenosylmethionine synthase [metK]. 45 436 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco2g02551 436 CDD S-AdoMet_synt 48 427 - -
Phco2g02551 436 SUPERFAMILY S-adenosylmethionine synthetase 283 432 IPR022636 GO:0004478|GO:0006556
Phco2g02551 436 Gene3D - 160 424 - -
Phco2g02551 436 FunFam S-adenosylmethionine synthase 177 284 - -
Phco2g02551 436 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 44 433 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco2g02551 436 PIRSF MAT 42 435 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco2g02551 436 ProSitePatterns S-adenosylmethionine synthase signature 2. 309 317 IPR022631 GO:0004478|GO:0006556
Phco2g02551 436 Pfam S-adenosylmethionine synthetase, C-terminal domain 283 424 IPR022630 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02551 Phco-Chr2 55371940 55374315 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02551 2 55371940 55374315 Phco6g01402 6 14196503 14197687 ECH
Phco8g02075 8 22100957 22103214 Phco2g02551 2 55371940 55374315 ECH
Phco2g02551 2 55371940 55374315 Phco2g02551 2 55371940 55374315 ECH