Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02075 ATGTGTAGTTGCGCTCGACTTCACAGTTCAGACCAAGCCCCACTCAACCTTCCTATCGTTAAGATCACTCTCTCTGCTTTTCTACCTTTGAAGGATCTTGAGCTTCTGGGTCCGTTTGTTTTGCCTTTTCTTTTACTGGGTCGATCTTTGTTTGTCCAAACTGGTTTAGACGAATGTGAACTATACCCTGTTTATTTTATTTCTGCAGAATACGTGTCAATCTTTCAGATCTATCCGAAATTTTTTAAAAGTTTAAAGATGGCAGAGACATTTCTGTTTACCTCGGAGTCTGTGAACGAGGGACACCCAGACAAGCTCTGCGACCAAATATCGGATGCTGTCCTTGACGCCTGCCTTGAGCAAGATCCGGAGAGCAAGGTCGCGTGTGAGACATGCACCAAAACCAACTTGGTCATGGTCTTCGGAGAAATCACCACCAAGGCCAACGTTGACTACGAGAAGATTGTACGTGATACCTGCAGGAATATCGGCTTCATCTCAAACGATGTGGGACTTGATGCCGACAACTGCAAGGTCTTTGTGAACATTGAGCAGCAGAGCCCTGATATTGCCCAGGGTGTCCATGGCCACCTCACCAAAAGACCTGAAGAAATCGGTGCTGGCGACCAGGGTCACATGTTCGGCTATGCAACCGATGAGACCCCTGAATTGATGCCATTGAGCCATGTCCTTGCAACCAAACTTGGGGCTCGTCTCACTGAGGTTCGCAAGAACGGTACCTGCTCTTGGCTCAGGCCTGATGGCAAGACCCAAGTCACTGTTGAGTATTACAACGACAAGGGTGCCATGGTTCCGGTTCGTGTTCACACTGTGCTCATCTCCACACAACATGACGAGACTGTCACCAACGATGAAATTGCTGCTGATCTCAAGGAGCACGTGATCAAGCCTGTGATTCCCGAGAAGTACCTTGATGAGAAGACCATTTTCCACTTGAACCCCTCTGGCCGTTTTGTCATTGGTGGTCCTCATGGCGATGCCGGTCTTACGGGCAGGAAAATCATCATTGATACCTATGGAGGATGGGGTGCTCATGGCGGCGGTGCCTTCTCTGGGAAGGACCCTACCAAGGTTGATAGGAGTGGTGCTTACATTGTGAGGCAGGCTGCTAAGAGCATTGTGGCGAGTGAACTAGCGAGGAGATGCATTGTGCAAGTGTCTTATGCTATTGGTGTGCCTGAGCCTTTGTCGGTTTTCGTTGATACCTATGGAACTGGAAAGATCCCTGACAAGGAGATCCTGAAGATTGTGAAGGAAAACTTTGACTTCAGGCCTGGTATGATTTCCATCAACCTTGATCTGAAGAGGGGTGGGAATAGCAGGTTCTTGAAGACTGCTGCATATGGACACTTCGGCAGAGAGGACCCTGATTTCACATGGGAAGTGGTCAAGCCCCTCAAGTGGGAAAAGGCCTAA 1437 0.4885 MCSCARLHSSDQAPLNLPIVKITLSAFLPLKDLELLGPFVLPFLLLGRSLFVQTGLDECELYPVYFISAEYVSIFQIYPKFFKSLKMAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRNIGFISNDVGLDADNCKVFVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCSWLRPDGKTQVTVEYYNDKGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASELARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKWEKA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02075 478 Pfam S-adenosylmethionine synthetase, C-terminal domain 327 468 IPR022630 GO:0004478|GO:0006556
Phco8g02075 478 ProSitePatterns S-adenosylmethionine synthase signature 1. 206 216 IPR022631 GO:0004478|GO:0006556
Phco8g02075 478 ProSitePatterns S-adenosylmethionine synthase signature 2. 353 361 IPR022631 GO:0004478|GO:0006556
Phco8g02075 478 Gene3D - 204 468 - -
Phco8g02075 478 Pfam S-adenosylmethionine synthetase, N-terminal domain 91 188 IPR022628 GO:0004478|GO:0006556
Phco8g02075 478 FunFam S-adenosylmethionine synthase 349 468 - -
Phco8g02075 478 FunFam S-adenosylmethionine synthase 221 328 - -
Phco8g02075 478 CDD S-AdoMet_synt 92 471 - -
Phco8g02075 478 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 88 477 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco8g02075 478 NCBIfam methionine adenosyltransferase 92 473 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco8g02075 478 SUPERFAMILY S-adenosylmethionine synthetase 202 326 IPR022636 GO:0004478|GO:0006556
Phco8g02075 478 SUPERFAMILY S-adenosylmethionine synthetase 90 196 IPR022636 GO:0004478|GO:0006556
Phco8g02075 478 SUPERFAMILY S-adenosylmethionine synthetase 327 475 IPR022636 GO:0004478|GO:0006556
Phco8g02075 478 Hamap S-adenosylmethionine synthase [metK]. 89 477 IPR002133 GO:0004478|GO:0005524|GO:0006556
Phco8g02075 478 Pfam S-adenosylmethionine synthetase, central domain 204 325 IPR022629 GO:0004478|GO:0006556
Phco8g02075 478 Gene3D - 91 329 - -
Phco8g02075 478 FunFam S-adenosylmethionine synthase 98 213 - -
Phco8g02075 478 Gene3D - 98 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02075 Phco-Chr8 22100957 22103214 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02075 8 22100957 22103214 Phco8g02075 8 22100957 22103214 ECH
Phco8g02075 8 22100957 22103214 Phco2g02551 2 55371940 55374315 ECH
Phco8g02075 8 22100957 22103214 Phco6g01402 6 14196503 14197687 ECH