Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00855 ATGTGCACTGGTCCCACACCCATAACCCTAAACTCAAACGCCCACCATCAAAGCCACTATATATTACTTCTCCACAACACTTCTCTCCAAAACCATCCAACAAGGAATTCGAATATTGATTATTTTGCATCCTTTCCTATATTCATTCCCCAACTTTCAACCATGGCCCCTTCAACTCAATTCTCCACCACTTTCCTCTCACTATGTCTCTTCCAATTCATAGCAGGTTCGTACTCAGCGACATTCACCATTGTGAACAAGTGCAGCTACACAGTGTGGCCCGGCATATTATCCAGCGCCGGAACCTCGCCGCTCTCCACCACCGGCTTTGTTTTACAGCCCGGCGAGTCCAACGTTGTCGACGTGCCACCCGCCTGGTCCGGCCGCCTCTGGGGGCGGACCCTCTGCTCACAAGACGCCGTCGGGAAATTCTCCTGCGTCACCGGCGACTGTGGCTCCGGCGTGGAATGCGCCGGAGGTAACGCCGCCCCGCCGGCCACGCTTGCAGAGTTCACGCTGAACGGAGCCGGCGGGCTGGATTTCTTCGACGTGAGCCTGGTCGACGGTTACAACCTCCCAATGATCGTGGAGCCCCAGGGCGCAACCGGCGGCGGAAACTGCACCGCAACGGGGTGCGTGGTGGACCTGAACACGCCGTGCCCCTCGGAGCTCAAAGTGACGAGCAGCGGTGAGGGCGTGGCGTGTAGAAGCGCGTGCGAAGCTTTCGATGATCCACAGTATTGCTGCAAGGGCGCTTACGCGACACCTGACACATGCAAACCCAGTTCCTACTCGCAGTTCTTCAAGAGCGCGTGCCCACGCGCTTATAGCTATGCCTACGACGATGGCTCCAGCACCTTCACTTGCGCCTCTGCTGATTATACCATCACTTTCTGCCCACAACCGTCCACAAGTTCGATAAAATCGGGGAACCCAATGGCGGTGGAAACCTCTGGAGCTGATTTAGACGGAAGATACAACAGTGTTATGGCGGTGATTCTTTGTGCTTTGGTGGCGTTTGTGGCAACTCAGTTTGGTGGCCTTTCACTGGCAGTGTCGCAATAA 1065 0.5577 MCTGPTPITLNSNAHHQSHYILLLHNTSLQNHPTRNSNIDYFASFPIFIPQLSTMAPSTQFSTTFLSLCLFQFIAGSYSATFTIVNKCSYTVWPGILSSAGTSPLSTTGFVLQPGESNVVDVPPAWSGRLWGRTLCSQDAVGKFSCVTGDCGSGVECAGGNAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMIVEPQGATGGGNCTATGCVVDLNTPCPSELKVTSSGEGVACRSACEAFDDPQYCCKGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGSSTFTCASADYTITFCPQPSTSSIKSGNPMAVETSGADLDGRYNSVMAVILCALVAFVATQFGGLSLAVSQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00855 354 SMART tha2 82 300 IPR001938 -
Phco4g00855 354 FunFam THAUMATIN-LIKE PROTEIN 1 80 300 - -
Phco4g00855 354 ProSitePatterns Thaumatin family signature. 142 157 IPR017949 -
Phco4g00855 354 ProSiteProfiles Thaumatin family profile. 79 300 IPR001938 -
Phco4g00855 354 PANTHER OS03G0233200 PROTEIN 67 300 IPR001938 -
Phco4g00855 354 CDD TLP-PA 81 299 - -
Phco4g00855 354 SUPERFAMILY Osmotin, thaumatin-like protein 80 301 IPR037176 -
Phco4g00855 354 Pfam Thaumatin family 86 300 IPR001938 -
Phco4g00855 354 Gene3D Thaumatin 80 300 IPR037176 -
Phco4g00855 354 PRINTS Pathogenesis-related protein signature 81 93 IPR001938 -
Phco4g00855 354 PRINTS Pathogenesis-related protein signature 142 171 IPR001938 -
Phco4g00855 354 PRINTS Pathogenesis-related protein signature 290 299 IPR001938 -
Phco4g00855 354 PRINTS Pathogenesis-related protein signature 129 140 IPR001938 -
Phco4g00855 354 PRINTS Pathogenesis-related protein signature 180 196 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00855 Phco-Chr4 6629345 6631029 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00279 7 1952775 1955605 Phco4g00855 4 6629345 6631029 ECH
Phco4g00855 4 6629345 6631029 Phco4g00855 4 6629345 6631029 ECH
Phco9g00397 9 2791698 2793581 Phco4g00855 4 6629345 6631029 ECH
Phco4g00855 4 6629345 6631029 Phco8g00394 8 3591677 3594034 PCT