Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00394 ATGACTGCTTCAACTCTCATCTTCCTATTCTTCTCTCACTTTCTTAAAGGGTCAAATTCTGCGACATTTACAATCGTAAACAAGTGTAGCTACCCGGTTTGGCCAGGGATTTTGTCCGGCGCCGGAACGGCTCAACTCGCCACCACCGGCTTTGCCCTGCAACCCGCCCAGTCCAACGCATTCGCCGTCCCCACCACCTGGTCCGGCCGCCTCTGGGGCAGAACCCTGTGCTCCACGGACTCCGCCGGGAAATTCTCCTGCTTCACCGGAGACTGCGGCTCCTCCGCCGTGGAATGCGACGGTGGGGGAGCCGTCCCGCCTGTCACACTGGCGGAGTTCACCTTGAACGGCGGCGGCGGACTGGATTTCTACGACGTCAGCGTGGTGGACGGCTACAACCTCCCCATGCTGGTTGAGGCACAGGGAAGCGGCGGGAACTGCTCCGCGACGGGGTGCGCCGCGGACTTGAACGGAGGGTGCCCGGCGGAGCTGAAGGTGAAGACGGCGGCGAGTGGGGAGGGCGTGGCGTGCAAGAGCGCGTGTGAAGCCTTTGGGGATCCGCGGTACTGTTGTAGTGGGCCCTACGCGACGCCTGAGACATGCAAGGCGAGCTCTTACTCGCAGTTGTTCAAGAGCGCGTGCCCACGCGCCTATAGCTTCGCATACGATGATGCCACCAGCACCTTCACCTGTGCCTCTGCGGATTACCGCATCACTTTCTGTCCCTCATCTACCAAAAGGTGGATGAAGTCAGGAAATGGGAAATTCCCAGTGGCAGTAGATATCTCAGTTGGGCAGGCTTATGGTGAGAAGTCACCCAAGCTCATGCTGTTAGCTTTTGCCACTGTTTTATTAAAAATATGGTGGCAATATGGCTGTTATGTATAG 888 0.5822 MTASTLIFLFFSHFLKGSNSATFTIVNKCSYPVWPGILSGAGTAQLATTGFALQPAQSNAFAVPTTWSGRLWGRTLCSTDSAGKFSCFTGDCGSSAVECDGGGAVPPVTLAEFTLNGGGGLDFYDVSVVDGYNLPMLVEAQGSGGNCSATGCAADLNGGCPAELKVKTAASGEGVACKSACEAFGDPRYCCSGPYATPETCKASSYSQLFKSACPRAYSFAYDDATSTFTCASADYRITFCPSSTKRWMKSGNGKFPVAVDISVGQAYGEKSPKLMLLAFATVLLKIWWQYGCYV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00394 295 Gene3D Thaumatin 21 242 IPR037176 -
Phco8g00394 295 Pfam Thaumatin family 27 242 IPR001938 -
Phco8g00394 295 FunFam THAUMATIN-LIKE PROTEIN 1 21 242 - -
Phco8g00394 295 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Phco8g00394 295 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Phco8g00394 295 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Phco8g00394 295 PRINTS Pathogenesis-related protein signature 70 81 IPR001938 -
Phco8g00394 295 ProSiteProfiles Ig-like domain profile. 198 295 IPR007110 -
Phco8g00394 295 PANTHER OS03G0233200 PROTEIN 8 242 IPR001938 -
Phco8g00394 295 SUPERFAMILY Osmotin, thaumatin-like protein 21 243 IPR037176 -
Phco8g00394 295 CDD TLP-PA 22 241 - -
Phco8g00394 295 PIRSF PR5 1 280 IPR001938 -
Phco8g00394 295 ProSiteProfiles Thaumatin family profile. 20 242 IPR001938 -
Phco8g00394 295 SMART tha2 23 242 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00394 Phco-Chr8 3591677 3594034 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00394 8 3591677 3594034 Phco8g00394 8 3591677 3594034 ECH
Phco8g00394 8 3591677 3594034 Phco4g00853 4 6606442 6607644 ECH
Phco4g00855 4 6629345 6631029 Phco8g00394 8 3591677 3594034 PCT