Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00279 ATGGAACAGCTCAAACTATCATTTCCATTTTTACTAACATTTCATCTGTTAGCATCAGCTGCAGTATCAACAACAACCTTCACAGTGGTTAACAAATGCGACTATACAGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCGGCGCTTCCAACAACCGGTTTCCTTCTCCAACCCGGCGACTCCAAAACCGTAACTGCTCCAACCTCTTGGGGTGGCCGTTTATGGGGCCGCACTCTCTGCACGCAAGACTCCGCCGGAAAATTCTCCTGCGTGACCGGCGATTGTGGCTCCGGCAAGCTCGAATGTGCGGGCAACGGCGCTTCGCCGCCGGCGACCTTGGCCGAGTTCACCCTCAACGGCGACGGAGGCCTCGATTACTTCGACGTGAGCCTCGTGGACGGTTACAATGTGCCGATGCTGGTGGCCCCCCAGGGTGGCTCCGGCAATAACTGCACCAGCACGGGGTGCGTGGGAGACCTCAACGGCGCGTGTCCTTCGGAGCTTAGGGTTACAAGCGTAGATGGAAAACAGAGCGTGGCATGTAAGAGCGCGTGCGAGGCGTTCGGGTCCCCGCAGTATTGCTGCAAAGGCGCGTATGGGTCGCCCAACACTTGCAAGCCTACTGCATATTCGCAGATTTTCAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTACGATGACAAGACCAGCACTTTTACATGCGCTTCTTCTGCGGACTACACGATCACTTTTTGCCCTTCCCCTAAAGATAACCCCAGTCAGAAATCGTGGCAGGGGCAAAACCCGAAATCAGATAGCAGTAGTTCTTCTTCTTCTTCTGAGTCGCCGCCACTTAACAATGGGACAATGGTGTATGTAGGTGCCATGGATGAAAGTGAATTATCATGGTCAGTGGGTACCCATGTGACAGTGAAGGAATCTCAAGCCATTGCTGGTTTTGTCAGTATCACCATTGCTCTTTGGCTCTTGTGCCACTTATAG 987 0.537 MEQLKLSFPFLLTFHLLASAAVSTTTFTVVNKCDYTVWPGILSNAGIAALPTTGFLLQPGDSKTVTAPTSWGGRLWGRTLCTQDSAGKFSCVTGDCGSGKLECAGNGASPPATLAEFTLNGDGGLDYFDVSLVDGYNVPMLVAPQGGSGNNCTSTGCVGDLNGACPSELRVTSVDGKQSVACKSACEAFGSPQYCCKGAYGSPNTCKPTAYSQIFKNACPRAYSYAYDDKTSTFTCASSADYTITFCPSPKDNPSQKSWQGQNPKSDSSSSSSSSESPPLNNGTMVYVGAMDESELSWSVGTHVTVKESQAIAGFVSITIALWLLCHL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00279 328 Pfam Thaumatin family 31 248 IPR001938 -
Phco7g00279 328 CDD TLP-PA 26 247 - -
Phco7g00279 328 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Phco7g00279 328 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Phco7g00279 328 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Phco7g00279 328 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Phco7g00279 328 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Phco7g00279 328 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Phco7g00279 328 Gene3D Thaumatin 25 248 IPR037176 -
Phco7g00279 328 PANTHER OS03G0233200 PROTEIN 16 248 IPR001938 -
Phco7g00279 328 MobiDBLite consensus disorder prediction 252 281 - -
Phco7g00279 328 SMART tha2 27 248 IPR001938 -
Phco7g00279 328 FunFam THAUMATIN-LIKE PROTEIN 1 25 248 - -
Phco7g00279 328 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00279 Phco-Chr7 1952775 1955605 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00279 7 1952775 1955605 Phco4g00855 4 6629345 6631029 ECH
Phco7g00279 7 1952775 1955605 Phco7g00279 7 1952775 1955605 ECH