Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00923 ATGTCAAAACAACTCAGTGAAGTTGGAAGTGGAGGACCAACCTGTTCCCATGACGAACACTACTTGCAAAGAGCAAAGTTGTGTAACTGTGTCTTTGTGGTAATGGCGGCGGTAAAACCAACAACATTGGCGTGTTGGCGTGGATGCGCATACACAGCTGCAAGGTCCTCAGCAAGAGAGAGATCAATTTACTGTGTTCATAGATATAAGACTATAGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAACAGGGAAGGTTTCAACTTCCCTACCCAACAAGGGGAAGAACCTTCTTCATATCCCTTTCTACATCCAATCAATACTGCTGATGATAGCACTCCTTCTACACCAATTCCACAATATGGCCAAATAGCCACTTCTACCTTGATTGAGACACCGGACCCATCTCAGCACCCTTTAAATCAAGGGAGAAAAAGACACTATAGAGGAGTTCGGCAGAGACCATGGGGGAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACTTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGATCCAAAGCAAAACTCAATTTCCCAGAACACGTTCTTCTTGCTTCAATACCACCACCACCTTCACCTTCTACTCAAAACATTAACAACAACAATAGTTATTATGCTTCTTCTTCACCTCTTGCACCAACACCTTCACCACCAGTTTATCAACCACAACCACAGGAAGAAGCTTTTCCAAATCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGCTGATCTACTACGTGTTGCTTCGGGCCTTCACCATCAAAACCCCAATGAGTCTTTCTATGATTCCAGTTCTTCAACTTTGTTCTCATCCTCCTCCACTTCAGTGACTCAGTCTGATCAACAGATTGGGGATGACGCGAGTGGCTCCAAGGAGGAAGAGTTTTATGGTTCTGGCTTTTTTAGAGGGAGTGATTTTCATGGCAAGAATTGA 1068 0.4541 MSKQLSEVGSGGPTCSHDEHYLQRAKLCNCVFVVMAAVKPTTLACWRGCAYTAARSSARERSIYCVHRYKTIEEPFIELNKVDRRHGKRPLPSDHASRENREGFNFPTQQGEEPSSYPFLHPINTADDSTPSTPIPQYGQIATSTLIETPDPSQHPLNQGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLASIPPPPSPSTQNINNNNSYYASSSPLAPTPSPPVYQPQPQEEAFPNLMQYAQLLWSRDDADLLRVASGLHHQNPNESFYDSSSSTLFSSSSTSVTQSDQQIGDDASGSKEEEFYGSGFFRGSDFHGKN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00923 355 MobiDBLite consensus disorder prediction 147 169 - -
Phco2g00923 355 MobiDBLite consensus disorder prediction 85 101 - -
Phco2g00923 355 Pfam AP2 domain 164 213 IPR001471 GO:0003700|GO:0006355
Phco2g00923 355 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700|GO:0006355
Phco2g00923 355 MobiDBLite consensus disorder prediction 238 252 - -
Phco2g00923 355 MobiDBLite consensus disorder prediction 298 355 - -
Phco2g00923 355 SMART rav1_2 164 227 IPR001471 GO:0003700|GO:0006355
Phco2g00923 355 MobiDBLite consensus disorder prediction 298 330 - -
Phco2g00923 355 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700|GO:0006355
Phco2g00923 355 MobiDBLite consensus disorder prediction 85 114 - -
Phco2g00923 355 FunFam Ethylene-responsive transcription factor 2 163 222 - -
Phco2g00923 355 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Phco2g00923 355 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Phco2g00923 355 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700|GO:0006355
Phco2g00923 355 MobiDBLite consensus disorder prediction 229 266 - -
Phco2g00923 355 CDD AP2 164 223 IPR001471 GO:0003700|GO:0006355
Phco2g00923 355 PANTHER DNA-BINDING DOMAIN 133 308 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00923 Phco-Chr2 11524383 11527647 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g00923 AP2 2.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00923 2 11524383 11527647 Phco7g01897 7 22595755 22597747 ECH
Phco2g00923 2 11524383 11527647 Phco2g00923 2 11524383 11527647 ECH
Phco4g03196 4 52672219 52675078 Phco2g00923 2 11524383 11527647 ECH
Phco7g01897 7 22595755 22597747 Phco2g00923 2 11524383 11527647 ECH
Phco5g01282 5 47507108 47508985 Phco2g00923 2 11524383 11527647 PCT