Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01897 ATGGAGAGAAGATCACATTCCACTGAAAGAGAAGAGGAACATGATTTGTTCCCAGTATACTCTGAAAGGTCACAGCAAGACATGTCAGCCATGGTGTCTGCCCTCACACAAGTCATGGGTGGCTCCAATGATTCTCTTCAACACCATGAACACCTTTTAACTTCTTCCCACAACACCTCATCCCAGAATAATAATGAACAATCCCAAGTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTCGACACTGCAGAAGCTGCAGCTCTTGCTTACGATGCAGCTGCTCTTAAATTCAAAGGAAGCAAAGCCAAACTCAATTTCTCTGAGAGGGTTCACGGTACTGACGAATTTGGTTACCTCACAAATCAACCCCTTTCATCAACCACCACTAGCAGCAACGACCAAGCTTCCAACCCTGTTGTTCCACACTTCACTCAAGAAACTTATTCACCAAGTCAATATTACCATCCACAACAAATCATGGGTACTGGTGGAAGTAACAGCTTCAATAACCAAGATATGCTTCGTTTCTATGGGGGAGACATGTTTGTTTCTTCTCAGCCAGCTGCATCTTCGTCTTCTTCTACAGGTCTCTCTCAGCAGCAAGAAGAGTTTCTGAGATTTTCCACGCAGTTTGGAGGTTCTTCTTCTGAGCCTCCTAGGAATTGGAGGGGTGATGGATATTGA 780 0.4564 MERRSHSTEREEEHDLFPVYSERSQQDMSAMVSALTQVMGGSNDSLQHHEHLLTSSHNTSSQNNNEQSQVPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDAAALKFKGSKAKLNFSERVHGTDEFGYLTNQPLSSTTTSSNDQASNPVVPHFTQETYSPSQYYHPQQIMGTGGSNSFNNQDMLRFYGGDMFVSSQPAASSSSSTGLSQQQEEFLRFSTQFGGSSSEPPRNWRGDGY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01897 259 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Phco7g01897 259 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Phco7g01897 259 MobiDBLite consensus disorder prediction 1 20 - -
Phco7g01897 259 MobiDBLite consensus disorder prediction 22 76 - -
Phco7g01897 259 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Phco7g01897 259 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Phco7g01897 259 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Phco7g01897 259 MobiDBLite consensus disorder prediction 155 175 - -
Phco7g01897 259 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Phco7g01897 259 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Phco7g01897 259 MobiDBLite consensus disorder prediction 1 88 - -
Phco7g01897 259 PANTHER DNA-BINDING DOMAIN 45 216 IPR044808 GO:0003700|GO:0009873
Phco7g01897 259 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Phco7g01897 259 MobiDBLite consensus disorder prediction 217 259 - -
Phco7g01897 259 MobiDBLite consensus disorder prediction 217 249 - -
Phco7g01897 259 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01897 Phco-Chr7 22595755 22597747 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco7g01897 AP2 4.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01897 7 22595755 22597747 Phco7g01897 7 22595755 22597747 ECH
Phco2g00923 2 11524383 11527647 Phco7g01897 7 22595755 22597747 ECH
Phco4g03196 4 52672219 52675078 Phco7g01897 7 22595755 22597747 ECH
Phco7g01897 7 22595755 22597747 Phco2g00923 2 11524383 11527647 ECH
Phco4g03196 4 52672219 52675078 Phco7g01897 7 22595755 22597747 PCT