Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01282 ATGAAGCAAGCAAACAGAATCCTCTCTTTTGATCTTGGTTTCACTCATCATCAAATCACTGGTCCTCCCTTTATAGAAATCTTAGATCTGCTTTTAACACAGGGGAAGAGGTCTCTTCCTCCTGATGAGGAGAAAAAAGAAGCTTTCAACTTTCCTTTTCATCTCACACCATCTCAAAATCCAAAGGAACAAGCTTCACCATCACCCTTTTCAAACCTTATTATGAGTACCAACCAAAACACCACCTTCTTCCCCACCCCACATGGCCAAATAACCAGTACTTCTAAATTTATTAATAGCCAGGATCCATCTCAAGCTACAAATCAAGGTACTGCTGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAAAGACCTTGGGGGAAATGGGCAGCTGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCTATGGCTTATGATGTTGCGGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAACGTGTTGCTGTGCCACTACCACCACCAACCAACAACACCACTTCTTCAGCTTCTGCACAACCCTCTTCCCTCACACCACCACCACATGTTGGTGGCCATCATCAAACTCTACAAACTAGTGGCAGTAGTTCTCTTGTAGTGTCACCAACATCAGAAGAAGCAGAAGGGTTTCCGAGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGAGATGATGATGATTTCCAACGGGTTGCATTGGGGCTTTACCAGCACCATCCCAATGAGGATCTTACCTATGGTTCATCTCAGCCACCACCTGTGCCATTTTTTCTGTCTTCTTCATCTTCTTCTGCATTTGCATCTTCAACTTCTCAGGGTGATGTTGGAGGCTATGGTTCTTCTGGATTCTATAGTCATGGAGGGAGTGGTTTTGATGAAGGGAACACGAGAGGATCATAG 969 0.4427 MKQANRILSFDLGFTHHQITGPPFIEILDLLLTQGKRSLPPDEEKKEAFNFPFHLTPSQNPKEQASPSPFSNLIMSTNQNTTFFPTPHGQITSTSKFINSQDPSQATNQGTADIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGNKAKLNFPERVAVPLPPPTNNTTSSASAQPSSLTPPPHVGGHHQTLQTSGSSSLVVSPTSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHPNEDLTYGSSQPPPVPFFLSSSSSSAFASSTSQGDVGGYGSSGFYSHGGSGFDEGNTRGS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01282 322 MobiDBLite consensus disorder prediction 178 227 - -
Phco5g01282 322 MobiDBLite consensus disorder prediction 208 226 - -
Phco5g01282 322 MobiDBLite consensus disorder prediction 266 322 - -
Phco5g01282 322 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Phco5g01282 322 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Phco5g01282 322 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Phco5g01282 322 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Phco5g01282 322 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Phco5g01282 322 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Phco5g01282 322 PANTHER DNA-BINDING DOMAIN 79 219 IPR044808 GO:0003700|GO:0009873
Phco5g01282 322 MobiDBLite consensus disorder prediction 266 301 - -
Phco5g01282 322 MobiDBLite consensus disorder prediction 183 201 - -
Phco5g01282 322 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Phco5g01282 322 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Phco5g01282 322 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01282 Phco-Chr5 47507108 47508985 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco5g01282 AP2 8.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01282 5 47507108 47508985 Phco2g00923 2 11524383 11527647 PCT