Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03196 ATGATCGCCTTTATGTTCGATCCACCCAAATACAGTAACATCAACACACTTGTTTATCAAGTGGATCGAAAACATGGGAAGAGGCCACTTCCTTTGGAAGAAGAAGAAGCAGAAGAAAAAACGTTTCCGTTTTATTTTTCTCAGTCTAAGCAAGACATGTCAGCTGTGGTATCAGCCCTTGTTGAAGTCATTGGTGGCAAACCACAGCCCAAAGATCCAACGACAACAGTGTCTCAGTCCAGTGCTGTTGAGAATATTTCGAATTTACCATCACATCCACCACAACACCACGGAAACGCAAGAAGACAGTATAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTCGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAACCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCGTCTCTCAGGGGAATTAGGTTACCTCACAAATCGACCACCATCATTTCAATCCTCTTCCACTCCCTTCCAACTGCTTCCTCGTCACACTGCAACTAATAACGATGCTATTGTTTCTTCGTCTTCTTCGCCATCTTCTTCAACCTTCTCGATGATATCCGCAGCTTCTTCTTCCGAGCCTCCTACGAAACGAACATCTCATTTCGATGCTAAACAAAAACGTTGA 714 0.4608 MIAFMFDPPKYSNINTLVYQVDRKHGKRPLPLEEEEAEEKTFPFYFSQSKQDMSAVVSALVEVIGGKPQPKDPTTTVSQSSAVENISNLPSHPPQHHGNARRQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGTKAKLNFPEKVRLSGELGYLTNRPPSFQSSSTPFQLLPRHTATNNDAIVSSSSSPSSSTFSMISAASSSEPPTKRTSHFDAKQKR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03196 237 MobiDBLite consensus disorder prediction 173 226 - -
Phco4g03196 237 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Phco4g03196 237 MobiDBLite consensus disorder prediction 66 107 - -
Phco4g03196 237 MobiDBLite consensus disorder prediction 170 237 - -
Phco4g03196 237 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Phco4g03196 237 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Phco4g03196 237 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Phco4g03196 237 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700|GO:0006355
Phco4g03196 237 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Phco4g03196 237 MobiDBLite consensus disorder prediction 71 94 - -
Phco4g03196 237 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Phco4g03196 237 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Phco4g03196 237 PANTHER DNA-BINDING DOMAIN 75 216 IPR044808 GO:0003700|GO:0009873
Phco4g03196 237 CDD AP2 103 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03196 Phco-Chr4 52672219 52675078 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco4g03196 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03196 4 52672219 52675078 Phco4g03196 4 52672219 52675078 ECH
Phco4g03196 4 52672219 52675078 Phco7g01897 7 22595755 22597747 ECH
Phco4g03196 4 52672219 52675078 Phco2g00923 2 11524383 11527647 ECH
Phco4g03196 4 52672219 52675078 Phco7g01897 7 22595755 22597747 PCT