Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00587 ATGTCTTCTGCTGGTGTTACCATCCTTAGCCCTGTTCCAAGGGAACTATTGTTGTTCCCAGATGGATACCATTGGTCCCCACTGCACCTGTCATTGGATCCTGGGTTTATTTTCATATATCTCTCCCATTCTGGATCTTTGACTCCGATGCGAGTCCTTCCGTACGATACCATTGAGTCGGTGAAACTCAAAATCCAAAAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGGCGGGAGCTAGCGCGGAGCAATTCCCTGCTGAAGGACTATGGGGTTACTGAAGGAAATGTATTGTATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACCTCTTCCGGAAAAGACTTTACATTTCAGGTGGAGAGATGCAGGGATGTTGGGTATGTTAAGCAGCAGATTGCGAAAAAGGAGAAGCATTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGAGGGTTATTGATGATATCTGTAGTAAATATAATGATGCAGTGATTCGTCTTTTTGTTAGAGAGAAATATGCAGAAGTTGGGACAGGACAAGATGAGTTGTCCGTCAAGGCGAGGGAGTTGAATGTTACCAAAGATTACGATGTTAGTGAAATTAATTGTAGGAGAGAACATGATGTTGTTAGTAAAGGAGATGCAGGAAGAGAGGATGGAGCTGCTGAGCCAATTGTGCCAAGGAAGACTCTTGATAGAGATCTTCTTTTGGAGCCTGTCATTGTTAATAAGAAAATTGAATTAGCTTCAGAGATTTGGAATATGATAAACTTTACATATGAAGGACTAAATAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACCGGGCAAAAGTATGTAGCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTCTCAGTAGATGGTGAAGGCTTAAAGAAGGGTACGAAAGTTGGTCAGGGAGCATTCAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGTGGTCGTCGATCATTATTTGGTGATCAGAAGGGCTTTTCTGGGGTTCCCCCGACTGTTATGGTTAAGTGCTTGCATGAAGGATTTAACCATCCTGGGGACTTGACTACTAAGCTTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGCGAGGATATGGGTCCTGGGGCATTTCCAGTGAAGGAAGTGCATAAAATTACTGTTCTGGACATGAGACTCGCAAATGCAGATAGACATGCTGGGAATATTTTGATAGGCAAAGAGGATGAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACGTTTGAATGGCTTTATTGGCCCCAAGCTCGCCAACCATACTCCCCTGAGATCATTGACTATATAAGGTCACTGAATGCCGATGAAGATATTGCCCTAATGAAGTTTCATGGATGGAATCTGCCAGTTGAATGTGCCCGTACTCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGGATGACACCCTTTGCCATTGGAAGCCTTATGTGTAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGAAACATTTCTGGATGCTGTTTCTGAAATCATGGACCAACACCTTGATGAGATTCTGTCATAG 1785 0.4342 MSSAGVTILSPVPRELLLFPDGYHWSPLHLSLDPGFIFIYLSHSGSLTPMRVLPYDTIESVKLKIQKGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLYLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYVKQQIAKKEKHFADPEQQEVVCNGELLEDQRVIDDICSKYNDAVIRLFVREKYAEVGTGQDELSVKARELNVTKDYDVSEINCRREHDVVSKGDAGREDGAAEPIVPRKTLDRDLLLEPVIVNKKIELASEIWNMINFTYEGLNSGNYPIRSAEGTGGAYFMLDSTGQKYVAVFKPIDEEPMAVNNPRGLPFSVDGEGLKKGTKVGQGAFREVAAYILDHPMSGRRSLFGDQKGFSGVPPTVMVKCLHEGFNHPGDLTTKLGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKEDENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIRSLNADEDIALMKFHGWNLPVECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEETFLDAVSEIMDQHLDEILS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00587 594 Gene3D - 37 110 - -
Phco1g00587 594 ProSiteProfiles Ubiquitin domain profile. 37 108 IPR000626 GO:0005515
Phco1g00587 594 SUPERFAMILY Ubiquitin-like 89 187 IPR029071 -
Phco1g00587 594 SMART ubq_7 113 187 IPR000626 GO:0005515
Phco1g00587 594 SMART ubq_7 37 108 IPR000626 GO:0005515
Phco1g00587 594 Pfam Ubiquitin family 43 109 IPR000626 GO:0005515
Phco1g00587 594 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Phco1g00587 594 Gene3D - 112 194 - -
Phco1g00587 594 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 46 564 IPR044571 -
Phco1g00587 594 SUPERFAMILY Ubiquitin-like 33 110 IPR029071 -
Phco1g00587 594 CDD Ubl_ubiquitin_like 115 185 - -
Phco1g00587 594 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Phco1g00587 594 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Phco1g00587 594 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Phco1g00587 594 SUPERFAMILY Protein kinase-like (PK-like) 429 592 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00587 Phco-Chr1 5105821 5108256 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00587 1 5105821 5108256 Phco7g01422 7 13135964 13138640 ECH
Phco1g00587 1 5105821 5108256 Phco1g00587 1 5105821 5108256 ECH
Phco4g00227 4 1426279 1428281 Phco1g00587 1 5105821 5108256 ECH
Phco11g01228 11 9216426 9218357 Phco1g00587 1 5105821 5108256 PCT