Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00227 ATGTCGGCTGCTGAGGTTGCTGTGAGACCGGCTCTGAAAGAATCGGTGTATTGGCAAGGGCGTTGTGGCGAATCTATCCTGATATATATAACCGTAGGCGGTGCTGTGACGCCAATGCGTGTGTCTGAATCTGATTCGATTGCTTCGGTAAAAATGAGGTTTCAAACATGCAAAGGAATTGCTGGGAATAGGCACAAGCTGGTCTATGGTGGCAGAGAGCTTGCCCGCAAGGATGCACTAATCAAGGACTACGGTGTCAATGGTAGCAATGCTCTTCACTTGGTTCTCCGTCTCTCTGACATGATCTTCATTGTTGTAAGGACCACCGGTGGGAAGGAGTTTGAGTTTCAGATTGATCGACATAGAAATGTGGGGTACCTTAAGCAACACATTAAGAAGAAGGGGAAAGATTTAATTGATCTTGAGGGTTGTCAAGAGCTTTTCTGTGACGGGGAAGAACTCCATGACCAGACCCTCTTCCGTGACTTTTGCAACGCTGATGATGGTGTGATTCATTTGGTAGTTCAAAAATCAGCAAAGGTTGATGCCAAACCGGTTCACAAGGATTTGGAGCTTTCGGTTGTTGCTGATGCCTCTGGTGTTGGAGGGAATCACGTGACGCCAAAGATACAGCATAGTGTAGATTTTTGGTTGGAACCAGTTTTTGTGAATCCTAATGTCAATTTTTTTCCTTTCCTTTGGGACATGATTGGCTCCACCTTCGATGGTTTGAAACAAGGAAATCACCCTATCAGGTCCTCCGAGGGCACAGGTGGGAGTTACTTCATGCAAGATTCAACAGGTATGGAGTATGTTTCGGTTTTCAAGCCCATTGATGAGGAGCCAAATGCGGTGAATAACCCACAAGGGCTACCGGTTTCGTCCAACGGTGAAGGTTTGAAAAGAGGGACAAGGGTAGGAGAAGGAGCTGTGAGAGAAGTTGCAGCATATATACTGGATCATCCAAGGGCTGGGCCAAGGTTGGAGTCAGGTGAAGCAATAGGCTTTGCCGGGGTTCCCCCAACTGTTATGGTCCAGTGCTTACACCGAGACTTTAACCACCCAGATGGGTTTGATTTCTCCCCGAAGCATTCCAAGGTGGGGTCACTGCAGACGTTTATGAAGAATGATGGTAACTGTGAGGACCTTGGACCAGGGGCTTTTTCTGTGGAGGAGGTGCATAAGATCACTGTGCTTGATCTAAGAATGGCTAATGCAGATAGGCATGCTGGGAATATATTATTCAGGAAAGATGCAGATGGCCGTACTTTCCTCATTCCCATTGATCATGGCTACTGTCTACCAGTGAATTTTGAGGATTGCACATTTGATTGGCTTTACTGGCGCCAAGCACGTCAACCATATTCTCCTGACACAGTTGAATATATTAAATCTCTGGATGCTGAGAGTGATATAGAGCTTCTGAAATATTATGGGTGGGATGTTCCGGTAGAGTGTGCAAGAACACTCCGCATCTCCACAATTTTATTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCATATGACATTGGAAGCATTATGTGTAGGGAAGATTTGAACAAGAAATCTGTAATCGAGGAGATTATTTGTGAAGCCCAGGAATCATTGGTACCTGGAATGGGAGAATCTGTGTTTCTTGAATCTGTCTCCCAGATCATTGATTCCCGAATTGACAAGCTTTCAAAATAG 1689 0.4559 MSAAEVAVRPALKESVYWQGRCGESILIYITVGGAVTPMRVSESDSIASVKMRFQTCKGIAGNRHKLVYGGRELARKDALIKDYGVNGSNALHLVLRLSDMIFIVVRTTGGKEFEFQIDRHRNVGYLKQHIKKKGKDLIDLEGCQELFCDGEELHDQTLFRDFCNADDGVIHLVVQKSAKVDAKPVHKDLELSVVADASGVGGNHVTPKIQHSVDFWLEPVFVNPNVNFFPFLWDMIGSTFDGLKQGNHPIRSSEGTGGSYFMQDSTGMEYVSVFKPIDEEPNAVNNPQGLPVSSNGEGLKRGTRVGEGAVREVAAYILDHPRAGPRLESGEAIGFAGVPPTVMVQCLHRDFNHPDGFDFSPKHSKVGSLQTFMKNDGNCEDLGPGAFSVEEVHKITVLDLRMANADRHAGNILFRKDADGRTFLIPIDHGYCLPVNFEDCTFDWLYWRQARQPYSPDTVEYIKSLDAESDIELLKYYGWDVPVECARTLRISTILLKKGVERGLTPYDIGSIMCREDLNKKSVIEEIICEAQESLVPGMGESVFLESVSQIIDSRIDKLSK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00227 562 SUPERFAMILY Ubiquitin-like 31 99 IPR029071 -
Phco4g00227 562 Gene3D - 26 102 - -
Phco4g00227 562 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 36 535 IPR044571 -
Phco4g00227 562 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 247 544 IPR000403 -
Phco4g00227 562 Gene3D - 103 190 - -
Phco4g00227 562 ProSiteProfiles Ubiquitin domain profile. 102 180 IPR000626 GO:0005515
Phco4g00227 562 Pfam Phosphatidylinositol 3- and 4-kinase 256 509 IPR000403 -
Phco4g00227 562 MobiDBLite consensus disorder prediction 283 303 - -
Phco4g00227 562 SUPERFAMILY Ubiquitin-like 80 177 IPR029071 -
Phco4g00227 562 Pfam Ubiquitin family 104 177 IPR000626 GO:0005515
Phco4g00227 562 Pfam Ubiquitin family 33 98 IPR000626 GO:0005515
Phco4g00227 562 SUPERFAMILY Protein kinase-like (PK-like) 403 560 IPR011009 -
Phco4g00227 562 SMART ubq_7 26 97 IPR000626 GO:0005515
Phco4g00227 562 SMART ubq_7 102 176 IPR000626 GO:0005515
Phco4g00227 562 ProSiteProfiles Ubiquitin domain profile. 24 101 IPR000626 GO:0005515
Phco4g00227 562 CDD Ubl_ubiquitin_like 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00227 Phco-Chr4 1426279 1428281 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00227 4 1426279 1428281 Phco4g00227 4 1426279 1428281 ECH
Phco4g00227 4 1426279 1428281 Phco1g00587 1 5105821 5108256 ECH
Phco4g00227 4 1426279 1428281 Phco4g03396 4 54284600 54286820 PCT