Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3562 ATGTCGGTTGCATTGAGTTCAAATTGCAACGAAAGGGTATATTGGGAAGGTCAATCAGAACATTGTTCTGTTGATCCAATCCTGATTTACTTAACAGTTGATAGTGTTATTACACCAATGCGTGTTTTGGAGTCTGATTCAATTGCTTCTGTCAAATTGAGGATTCAGCAAAGTAAAGGTTTTGTGGTGAAGAAACAGAAGCTAGTTTTCGGTGGCAGAGAGCTTGCGCGTAACCATACACTTATTAAGGAGTATGGTGTTGCCGATGGCAATGTTCTTCATTTAGTTTTACGCCTTTCAGATCTTCTTTTTATTGTTGTTAGGACGGTTTCTGGTAAGGAATTTGAGTTTCATATTGATAGGCGTAGGAATGTGGGGTATCTTAAACAAAGGATTAAGATAAAGGGGGAAGGTTTTATTGATCTTGAGGAACAAGAGCTTTTTTGTAATGATGAAGAGCTTAATGATCAGATTCTCTTTCATGATATATGTAAAGGTGATGATGATGTAGTTCATTTGATTATTAAAAAATCAGTTAAGGTTAGAACTACAGCTATTCACAATGATTTGAAGCTTTCTCTTGAAGCTTCAATACCGGAGGAGAGAATCGATCAAAGAGCATTACAATTACAAGTAGAAGATGATAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATAATAGGAACAAACAGATTCAGATAGCAAAGTTACCACCTGGTGTTGATTTCTGGTTGGAACCTATTGTTGTGAATCCCAGGATCAATTTTTTGCCTTTCCATTGGGACTTAATCAACTCCACATACGAGGGTTTGAAGAAAGGAAATCGTCCTATTAGGTCCTCAGAAGGAACAGGAGGGACTTATTTTATGCAAGATTCAACAGGTCAGCGGCATGTTTCAGTTTTCAAGCCCTTGGATGAGGAACCCATGGCTGTGAACAACCCAAGAGGCCTACCAAGTTCAACAAACGGCGAAGGTTTAAAAAGAGGAACAAGGGTGGGAGAAGGAGCTTTGAGGGAGGTTGCAGCTTATGTGTTAGATCATCCAAGGAGTGGACCGCGTTTGGTGACAGGTGAAGAAATTGGGTTTTCTGGTGTTCCTCCTACTGTTATGGTGCAGTGCTTACACGAAGAATTTCACCACCCAAATGGTTATGCTTGCTCATCAAAACATGTTAAGATCGGATCATTACAGAAGTTCATGAATAATGACGGTAGTTGCGAGGACATTGGACCTGGGGCGTTTCCGGCAGAGGATGTGCATAAGATAACTGTGCTTGATATAAGAATAGCCAATGCAGACAGACATGCTGGAAATATTTTGATCAGAAAGGAGGCAGGTGGCCAGATTAAGCTCATTCCTATCGATCATGGCTATTGTCTACCAGAGAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCGCAAGCACGCCAGCCTTACTCACTCGAGACGGTTGATTATATCAATGCTTTGGATGCTGAAAAAGACATTGAACTTTTGAAACTTTATGGATGGGAAATTCCGCTTCAGTCTGCACGGACACTTCGCATTTCCACGATGCTACTGAAGAAAGGGGTTGAGAGAGGTCTTACTCCCTATGCAATTGGAAGCATCATGTGTCGGGAAAATTTGAACAAGGAATCTGTAATTGAGGAAATTATAAGCGAAGCACAAGATTCCTTGCTTCATGGCATGGAGGAATCGGCATTTCTTGAATCCGTCTCCCGAATCATGGATTTCCGTCTTGATAAGCTCACAAAATAG 1782 0.3984 MSVALSSNCNERVYWEGQSEHCSVDPILIYLTVDSVITPMRVLESDSIASVKLRIQQSKGFVVKKQKLVFGGRELARNHTLIKEYGVADGNVLHLVLRLSDLLFIVVRTVSGKEFEFHIDRRRNVGYLKQRIKIKGEGFIDLEEQELFCNDEELNDQILFHDICKGDDDVVHLIIKKSVKVRTTAIHNDLKLSLEASIPEERIDQRALQLQVEDDNNNNNNSNNNNNNNNNRNKQIQIAKLPPGVDFWLEPIVVNPRINFLPFHWDLINSTYEGLKKGNRPIRSSEGTGGTYFMQDSTGQRHVSVFKPLDEEPMAVNNPRGLPSSTNGEGLKRGTRVGEGALREVAAYVLDHPRSGPRLVTGEEIGFSGVPPTVMVQCLHEEFHHPNGYACSSKHVKIGSLQKFMNNDGSCEDIGPGAFPAEDVHKITVLDIRIANADRHAGNILIRKEAGGQIKLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSLETVDYINALDAEKDIELLKLYGWEIPLQSARTLRISTMLLKKGVERGLTPYAIGSIMCRENLNKESVIEEIISEAQDSLLHGMEESAFLESVSRIMDFRLDKLTK* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3562 593 ProSiteProfiles Ubiquitin domain profile. 29 98 IPR000626 GO:0005515
Mtr8g3562 593 SUPERFAMILY Protein kinase-like (PK-like) 434 592 IPR011009 -
Mtr8g3562 593 SUPERFAMILY Ubiquitin-like 37 100 IPR029071 -
Mtr8g3562 593 MobiDBLite consensus disorder prediction 313 334 - -
Mtr8g3562 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 593 IPR044571 -
Mtr8g3562 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 2 593 - -
Mtr8g3562 593 Gene3D - 29 100 - -
Mtr8g3562 593 SUPERFAMILY Ubiquitin-like 98 177 IPR029071 -
Mtr8g3562 593 ProSiteProfiles Ubiquitin domain profile. 103 177 IPR000626 GO:0005515
Mtr8g3562 593 Gene3D - 104 191 - -
Mtr8g3562 593 SMART ubq_7 103 176 IPR000626 GO:0005515
Mtr8g3562 593 SMART ubq_7 27 98 IPR000626 GO:0005515
Mtr8g3562 593 CDD Ubl_ubiquitin_like 105 174 - -
Mtr8g3562 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 278 575 IPR000403 -
Mtr8g3562 593 Pfam Phosphatidylinositol 3- and 4-kinase 287 540 IPR000403 -
Mtr8g3562 593 Pfam Ubiquitin family 37 99 IPR000626 GO:0005515
Mtr8g3562 593 Pfam Ubiquitin family 105 177 IPR000626 GO:0005515
Mtr8g3562 593 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3562 Mtr-Chr8 46190881 46193282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3562 2 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.806 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3562 - - gmx:100809172 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3562 8 46190881 46193282 Mtr8g3562 8 46190881 46193282 ECH
Mtr8g3562 8 46190881 46193282 Mtr8g0799 8 9918847 9922110 ECH
Mtr8g3562 8 46190881 46193282 Mtr7g3875 7 55561978 55565099 ECH
Mtr5g0230 5 2121699 2125186 Mtr8g3562 8 46190881 46193282 PCT