Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0230 ATGTCGGTTGCTGATGTTGCATTGAGACCGATTTTAAAAGAATCGGAAAAAAATTCACATTGTCATCACCGTCGTAGTTCAAGTGAATCCATTCTGATATACGTCACCGTAGACGGAGCAGTAACACCGATGCGTGTGTTAGAATCTGATTCAATTGCATCAGTGAAAATGAGGATTCAAACACGCAAAAATGTTTCATGGAAAAAGCAAAATCTAGTTTCCAATGGAAGAGAATTATCTCGTAACAACGCAGAGATGAAAGAGTATGGTGTAACTACTGGTAATGTTGTTCATTTGGTTCTTCGTCTTTCTGACATGATTTTCATTGTTGTGAGGACAATGTGTGGGAAGGAATTTGAATTTCAGATTGATCGGCATAGGAACGTTGCACATCTTAGGAATTGTATTAAAAGAAAGGGGAAAGGTTTTGTTGATCTTGTTGAGGAGGAACAAGAGTTTTTTTGCAGCGGTGAAAAGCTTGACGATAAGAGGATTTTTGATGATATTTGTAAGAATGATGATGATGTTATTCATCTTATTGTTAAAAAATCGGCGAAAGTTAATGCTACTTTTGTTCATAATAAGGATTTAGAGGTTTCTGTTGTTGCAGATAATTTGAATTCGAATTCGAATCAGAATTTGAATAATCAGAATCAGGATGAGGTTGTTAAGGTTATAGAACAACCCTATGGTTTTGATTTTTTGTTAGAACCGATTTTTGTGAACCCTAGGATCAATTATTTTCCTTTCCTATGGGATATGATAGATGCAACTTTCAATGGTTTGAAAAAAGGAAATAAACCCGTTAGATCTTCTGAGGGAACAGGTGGGACTTACTTCATGCAAGATTTGAAAGGTGTGGAGTATGTTTCCGTTTTCAAGCCAATTGATGAGGAACCAATGGCGGTTAATAATCCGCGTGGATTGCCGGTTTCTGTGAACGGTGAGGGATTGAAGAGAGGGACAAAGGTTGGAGAAGGAGCTGTGAGAGAAGTTGCGGCTTATATATTGGATCATCCAAAGGCTGGACCACGTTTGGTGTCTGGTGAAGCGATTGGTTTTGCTGGTGTTCCACCTACAGTTATGGTGCGGTGTTTACATGAAGCGTTTAATTACCCTGATGGGGGGGATCGTGGCTCTTCGAGGATGGATCATAAGGTGGGATCTTTGCAGAAGTTTATGAGTAATGATGGTAATTGTGAGGATATTGGACCTGGTGCTTTTCCTGTGCAAGAGGTGCATAAGATCAGTGTGCTTGATATAAGAATGGCGAATGCAGATAGGCATGCAGGGAATATATTGTTTAGAAAAGAGCTAAATGGTGAAACCATGCTCATTCCCATTGATCATGGCTATTGTCTTCCTGAGAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCTCAAGCACGTCAGCCATACTCTCCCGATACAGTTGATTACATATACTCTCTGGATGCTGAAAAGGACATAGAGCTTCTGAAATATTATGGTTGGGATGTTCCAGTTGAGAGTGCTAGAACACTCCACATCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCCTATGCCATTGGAAGCATCATGTGTAGGGAAAATCTAAACAAAGAATCAGTAATTGAGGAGATTGTCTCTGAAGCCCAGAAATCATTGCTACCAGGCACGGAGGAATCTGTTTTTCTCGAATTTGTATCGCAGATCATGGATTCCCGCCTTGGTGAGCTGTCGAAATAG 1749 0.4002 MSVADVALRPILKESEKNSHCHHRRSSSESILIYVTVDGAVTPMRVLESDSIASVKMRIQTRKNVSWKKQNLVSNGRELSRNNAEMKEYGVTTGNVVHLVLRLSDMIFIVVRTMCGKEFEFQIDRHRNVAHLRNCIKRKGKGFVDLVEEEQEFFCSGEKLDDKRIFDDICKNDDDVIHLIVKKSAKVNATFVHNKDLEVSVVADNLNSNSNQNLNNQNQDEVVKVIEQPYGFDFLLEPIFVNPRINYFPFLWDMIDATFNGLKKGNKPVRSSEGTGGTYFMQDLKGVEYVSVFKPIDEEPMAVNNPRGLPVSVNGEGLKRGTKVGEGAVREVAAYILDHPKAGPRLVSGEAIGFAGVPPTVMVRCLHEAFNYPDGGDRGSSRMDHKVGSLQKFMSNDGNCEDIGPGAFPVQEVHKISVLDIRMANADRHAGNILFRKELNGETMLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYIYSLDAEKDIELLKYYGWDVPVESARTLHISTMLLKKGVERGLTPYAIGSIMCRENLNKESVIEEIVSEAQKSLLPGTEESVFLEFVSQIMDSRLGELSK* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0230 582 ProSiteProfiles Ubiquitin domain profile. 33 106 IPR000626 GO:0005515
Mtr5g0230 582 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 582 - -
Mtr5g0230 582 Gene3D - 13 100 - -
Mtr5g0230 582 ProSiteProfiles Ubiquitin domain profile. 107 186 IPR000626 GO:0005515
Mtr5g0230 582 SMART ubq_7 31 102 IPR000626 GO:0005515
Mtr5g0230 582 SMART ubq_7 107 182 IPR000626 GO:0005515
Mtr5g0230 582 SUPERFAMILY Ubiquitin-like 82 183 IPR029071 -
Mtr5g0230 582 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 582 IPR044571 -
Mtr5g0230 582 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 265 564 IPR000403 -
Mtr5g0230 582 SUPERFAMILY Ubiquitin-like 15 104 IPR029071 -
Mtr5g0230 582 CDD Ubl_ubiquitin_like 109 180 - -
Mtr5g0230 582 Pfam Phosphatidylinositol 3- and 4-kinase 274 529 IPR000403 -
Mtr5g0230 582 SUPERFAMILY Protein kinase-like (PK-like) 418 578 IPR011009 -
Mtr5g0230 582 Pfam Ubiquitin family 33 103 IPR000626 GO:0005515
Mtr5g0230 582 Pfam Ubiquitin family 109 183 IPR000626 GO:0005515
Mtr5g0230 582 Gene3D - 104 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0230 Mtr-Chr5 2121699 2125186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0230 1 581 Acyl Lipid Metabolism Gene Families AT5G24240 53.061 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0230 - - gmx:100787492 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0230 5 2121699 2125186 Mtr5g0230 5 2121699 2125186 ECH
Mtr5g0230 5 2121699 2125186 Mtr8g0799 8 9918847 9922110 ECH
Mtr5g0230 5 2121699 2125186 Mtr7g3875 7 55561978 55565099 ECH
Mtr5g0230 5 2121699 2125186 Mtr8g3562 8 46190881 46193282 PCT