Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3875 ATGTCATCTGCTGGTGTTAGTACTCTTAGTCCAGTGGATCCCACTGAGCCATTGTTGTCTCCAAATGCATTCCATTTACCATCTCACTTGTCTTTTGAGGACAAATCCATTTCCATATTTCTCTCGGTCTCGGGTTCATTGACTCCTTTTCGTGTTATGGAATGGGATACTATTGAGTCTGTTAAGTTCAAAATCCAAAGGTGTGAGAGTCTTCCATTTTTAACTAACAAACAGAAGTTGGTTTATGCTGGCCGTGAACTTGCTCGAAGTGATACTCTGCTCAAGGATTATGGAGTAACTGATGGAAATGTTTTGCATTTGATAATCAAATTATCAGATCTTCAGCTCATCAATGTGAAAACATCTTCGGGGAAGGAATTTTCTTTTCAGGTCGAACGAGGTAGGGATGTAAAATACATCAAGCGAAGGATTGCTAAAAAGGAGAAACAGTTTGATGATCTCGAGGAGCAGGAACTTGTGTGTAATGGGGAACGGTTGGAGGATCAGAAGCTTATTGATGACATCTGCTGCAAGCATAATGATGCAGTGGTGCATCTGTTTGTTCGAAAAAGGAATGCAAAAGTTCATAGAAGACCCTTTGAGTTGTCCATTGTAACTACAGACTTGGCTGATACGAAAACTGACGATGTTTTCGAAAATTCTTGTGGAAGAAAATTTGAGGTTGGTGGTGTAGAAGATACCGATGCCATTCAGAGAGCGGTGCCAAGAAAGCTTCCCGATAGAGATTTTCTTTTGGAGCCAATTATAGTTAACCCTAAAATTGAGTTAGCTTCAGTGATTCGAAATATGGTAAACTCTGCATACGATGGACTAGCTAGCGAATACTATCCAATAGGATCTGCAGAAGGTACCGGGGGAGCTTACTTTATGCTTGATTCAACAGGTCAGAAGTATGTGTCTGTTTTTAAGCCTATCGACGAAGAGCCAATGGCTGTGAATAACCCCCGATGTCTTCCATTATCATTAGACGGTGAAGGCTTAAAAAAGGGTACAATAGTTGGTCAAGGAGCGTTCAGGGAAGTTGCTGCTTATGTTTTGGATCATCCAATAAGTGGACGTCGCAAGTTATTTGGTGATGTGAAGGGTTTTGCTGGTGTTCCTCCAACATTGATGGTCAAGTGCTTGCATAAGGGATTTAACCATCCAGGAGACTTGATGGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAACAATGGGAGCTGTGAAGATATCGGTCCTGGGGCTTTCCCGGTAAATGAAGTACACAAAATTAGTGTACTGGACATAAGATTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGTGGAGGACAATGACCAGTCTGTTCTGGTTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACTTTTGAATGGCTTTACTGGCCCCAAGCTCGCCAGCCGTATTCTGCTGAAACTATTGAGTACATAACGTCACTGGATGCTGAAGAAGATATTGCACTTTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCTCGAACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACCCCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAGGAATCTGTGATAGAGGAAATAGTTGAAGAAGCATTTGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTAGATGCTGTTTCTCAAATCATGGACCAGCGCCTTGATAAGATTTTCAACTCTCTTTTTTAA 1788 0.4144 MSSAGVSTLSPVDPTEPLLSPNAFHLPSHLSFEDKSISIFLSVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAVVHLFVRKRNAKVHRRPFELSIVTTDLADTKTDDVFENSCGRKFEVGGVEDTDAIQRAVPRKLPDRDFLLEPIIVNPKIELASVIRNMVNSAYDGLASEYYPIGSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRCLPLSLDGEGLKKGTIVGQGAFREVAAYVLDHPISGRRKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLMAKIGSMQMFVKNNGSCEDIGPGAFPVNEVHKISVLDIRLANADRHAGNILISTVEDNDQSVLVPIDHGYCLPTSFEDCTFEWLYWPQARQPYSAETIEYITSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEAFDSVLPGTSEATLLDAVSQIMDQRLDKIFNSLF* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3875 595 Gene3D - 28 115 - -
Mtr7g3875 595 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 281 574 IPR000403 -
Mtr7g3875 595 Pfam Ubiquitin family 39 111 IPR000626 GO:0005515
Mtr7g3875 595 Pfam Ubiquitin family 117 191 IPR000626 GO:0005515
Mtr7g3875 595 Gene3D - 116 201 - -
Mtr7g3875 595 ProSiteProfiles Ubiquitin domain profile. 117 174 IPR000626 GO:0005515
Mtr7g3875 595 CDD Ubl_ubiquitin_like 117 187 - -
Mtr7g3875 595 Pfam Phosphatidylinositol 3- and 4-kinase 290 539 IPR000403 -
Mtr7g3875 595 ProSiteProfiles Ubiquitin domain profile. 37 110 IPR000626 GO:0005515
Mtr7g3875 595 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 593 - -
Mtr7g3875 595 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 593 IPR044571 -
Mtr7g3875 595 SUPERFAMILY Ubiquitin-like 109 193 IPR029071 -
Mtr7g3875 595 SMART ubq_7 115 189 IPR000626 GO:0005515
Mtr7g3875 595 SMART ubq_7 37 110 IPR000626 GO:0005515
Mtr7g3875 595 SUPERFAMILY Ubiquitin-like 33 111 IPR029071 -
Mtr7g3875 595 SUPERFAMILY Protein kinase-like (PK-like) 399 591 IPR011009 -
Mtr7g3875 595 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3875 Mtr-Chr7 55561978 55565099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3875 34 589 Acyl Lipid Metabolism Gene Families AT5G24240 55.080 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3875 - - gmx:100791631 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3875 7 55561978 55565099 Mtr7g3875 7 55561978 55565099 ECH
Mtr8g0799 8 9918847 9922110 Mtr7g3875 7 55561978 55565099 ECH
Mtr5g0230 5 2121699 2125186 Mtr7g3875 7 55561978 55565099 ECH
Mtr8g3562 8 46190881 46193282 Mtr7g3875 7 55561978 55565099 ECH
Mtr7g3875 7 55561978 55565099 Mtr8g0799 8 9918847 9922110 PCT