Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2400 ATGCCGACGCCGGTAAGCTCCGCTCGTCAATTCCTAACCGACGAAGCGGCGCGTGCCCTCGACGACGCAGTAGCCGTCGCACGCCGTCGCAGCCATGCACAAACAACCTCCCTTCACACCATCTCCGCCTTACTCTCCCTCCCATCTTCATCCCTCCGCGACGCCATCTGCCGAGCTCGAACCGCCGTTAGATTCCCGTCATTCTCGCACCGTCTTCACCTCCGAGCACTTGAGCTCTCCGTCGGCGTATCCCTCGACCGCCTCCCGTCGTCAAAACCATCTCCGGTAGAAGAGCCGCCGGTTTCGAATTCTCTCATGGCGGCGATCAAAAGGTCTCAGGCGAATCAACGCCGGTCGCCGGAGAGTTTTCATTTCTACAACCATAACGGAACGACGCCGTCTTTGTTGAAAGTTGAACTGAAACACTTCGTTCTATCCATTCTTGATGATCCTATAGTGAACCGTGTTTTCTCTGAAGCTGGTTTTCGTAGTTGTGATGTTAAACTTGCTTTACTTCAACCACCGGTTCAATCATCATCCCGGTTTTTATCCTCTCCGCCGGTTTTTCTTTGTAATCTTGAACCGGGTCGAACCGGGTTAACTCCTTTTCCTTTAGGGGTTGATGAGAATTCAAGAAGAATAGCTGAGGTTATAGCAATGAAAGGTAAAAAGATGAATCCTTTGTTGATGGGTGTTTATGCAAAAGATGCTTTTAGAAATTTTGTTGAGTTGTTACAAAAGGGTTTAGGTGGTGGTTTGTTTCCACCTGGGATGTCTGGTTTGAGTGTTGTGTGTGTTGAAAAGGAGATTGTCGAGTTTGTTAAGGATGGTGGGAGTGAGGAGAAGATGGGTTTGAGGTTTAAGGAAGTGGGGTGTGAGGTGGAGAAATGTTTGGGTGCTGGTGTTGTTGTTGGGTTTGGAGAGATTGAGGTTTTGGTTGGGGATGATGTGGATGGTGGATGTATTAAGTTTGTTGTGTCGGAGTTGGGGAGATTGTTGGAGGTTTATGGTGAGAAGGTTTGGTTGATGGGTGTGGCTGAAACGTCGGAGGCTTATTCGAAGTTTTTGAGGTTGTTTCCGGGTGTGGAGAAGGATTGGGATTTGCATTTGGTTACTGTGACATCTGCTACTCCTTCAATGGAAGGACTCTACTCTAAATCCAGTTTGATGGGGTCCTTTGTTCCATTTGGTGGATTCTTTTCTACACCTCCTGAAAGCAAAAGTCCCATTAGCTCTGCAAATGCATCATTTACTCGCTGTGACAAATGCAATGAAAAGTATGAACAAGAAGTTGCTGATGCTTTTAAGGTAGATCCTGCTACTCTGGCATCAAATTACACAACAAGCTTGCCTTGGTTTAAAAAGGTTGTTGATGTGGATACACATGGAGGACTTGATGTGGCAAAGGTAAATGAAGAAAATACAAGCTTGAATGATAAGATATTGGGATTTCAAAAGAAATGGAATGATATTTGTCAACGTCTTCATCAAGCAAGGTCTCATGTCCCATCACTTGAAGTTTTACGGTTTGGTTCAGGTTTTAACGAAGGCAGCAGTAAAGATTCATCACTTAATGAACTCCAACGTTCTAGTCCATTTTCCTACATGCCTAAAGAGTTGCATGGTACTTTTCCATCAAAACATTTATCACCCACTCCAGTACATACTGGTAGAGTTAGTGTCAATGTTGGAACTGATCGTGTGCCGAAAGTTACAGAGACTCAACAAAATGACATGACGACTCCTTGGCTCGCCCCTTCACGTATGGCCAATATGAGTGTACTGGAAAACAAATCATCTTCATCCCTTATTCCTGTGACCACAGATTTAGGATTGGGAACGTTATATACATCAACACCAATTGCTCACAAGCCAGATACTTCAGAATTTCAAGATAAAATAAAGCATTTTGAGCACTTTCCAGAGTCTACTTCAGCTGATTCTGTTGCTGTCAATGGAAATACATCACATAAGATTGCTAGATCCTCCTTCCCGGCTTCAAACATGGCAACAAAATTTGATTCAGTAGATTTCAAGTCTCTTAATAAACTTCTCTTTGAAAAGGTTGGCTGGCAGAATCAGGCGATATGTGATATCAACCGAACTCTGTCCCTTCATAAATCCGGTGAAGGGAAGAGCAGAGACTTGCATGGTAGAGCAGACATATGGTTTGCTTTCCTAGGACCAGATAGAATTGGAAAAAAGAAAATTGCTTCGGCACTTGCAGAGACTATATTTGGAAATACAGAAAGCATCATCTCTTTGGATCTCGGCTTCCAAGACGGGCTTTACCCACCGAACTCGATTTTCGAATGCCAAAAGTCATTATGTTATGACTTGTTTATAAGGAAAACAGTTGTGGATTATATTGCTGGGGAGTTGAGTAAAAATCCTCATTCCGTTGTCTTTCTAGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAGTAGTTTGTTGCAGGCAATAAGAAGAGGTAAATTTCCAGACTCGCGTGGAAGGGAAATAAGCATCAACAATGCAATCTTTCTTTTATCCTCGACTGTCTGTAAAGGCAACGGCTCTTCTGCTTTGGTGGAAGGCAACTTATTTTCTGAAGAAACAATACTTGAAGCCAAAAGATGTCAAATGCAATTACTACTCGGAGATACATCTGAGGATGCCAAAAGAAGCTTTAGTACAAATGTCAAGATTGTGCGGAGGAAAGGGTTTTCCAAACCATCATTTATGAATAAAAGAAAACGAGCTGATACTAGTGACTTCAAAGAGGGAGCAGCAAGCAAGATGCAAAAACAGGTTTGCGAGACATCGATGTCCTGTCTGGATTTAAATATGCCTCTAGACGAGGGTGAAGAAGGTATGGACGAGGACAACAATGACCATGAACGCGATTTTGTAGTGGAAAACTCAGATTCCTGGTTTAGTGATTTCTGCGATAAAATGGACGAAAAAGTGGTTTTCAAGCCATTCGATTTTGATGCACTTGCTGAACAATTACTAAAAAGCATTAGCATACAATTTGAAAAGGCATTTGGTTCAGAGTTTCAGTTGGAAGTCAATTATGAGGTAATGGCACAGATACTTGCCGCTGCTTGGTTAGCAGACAAGAAAGATGCAGTGGATAATTGGGTTGAAAGTGTACTTGGCAAAGGCTTCTTTGAAGCTCAGCAGAAATACCACCCTGTAACTAAATATGTTGTGAAACTAGTTAACTGTGAATCTATTTTTGTCGAAGAACCTGATCTTGGAGTATGCCTTCCTGCTAGCATTAACTTGAAGTAA 3279 0.4279 MPTPVSSARQFLTDEAARALDDAVAVARRRSHAQTTSLHTISALLSLPSSSLRDAICRARTAVRFPSFSHRLHLRALELSVGVSLDRLPSSKPSPVEEPPVSNSLMAAIKRSQANQRRSPESFHFYNHNGTTPSLLKVELKHFVLSILDDPIVNRVFSEAGFRSCDVKLALLQPPVQSSSRFLSSPPVFLCNLEPGRTGLTPFPLGVDENSRRIAEVIAMKGKKMNPLLMGVYAKDAFRNFVELLQKGLGGGLFPPGMSGLSVVCVEKEIVEFVKDGGSEEKMGLRFKEVGCEVEKCLGAGVVVGFGEIEVLVGDDVDGGCIKFVVSELGRLLEVYGEKVWLMGVAETSEAYSKFLRLFPGVEKDWDLHLVTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPPESKSPISSANASFTRCDKCNEKYEQEVADAFKVDPATLASNYTTSLPWFKKVVDVDTHGGLDVAKVNEENTSLNDKILGFQKKWNDICQRLHQARSHVPSLEVLRFGSGFNEGSSKDSSLNELQRSSPFSYMPKELHGTFPSKHLSPTPVHTGRVSVNVGTDRVPKVTETQQNDMTTPWLAPSRMANMSVLENKSSSSLIPVTTDLGLGTLYTSTPIAHKPDTSEFQDKIKHFEHFPESTSADSVAVNGNTSHKIARSSFPASNMATKFDSVDFKSLNKLLFEKVGWQNQAICDINRTLSLHKSGEGKSRDLHGRADIWFAFLGPDRIGKKKIASALAETIFGNTESIISLDLGFQDGLYPPNSIFECQKSLCYDLFIRKTVVDYIAGELSKNPHSVVFLENVDKADFLVQSSLLQAIRRGKFPDSRGREISINNAIFLLSSTVCKGNGSSALVEGNLFSEETILEAKRCQMQLLLGDTSEDAKRSFSTNVKIVRRKGFSKPSFMNKRKRADTSDFKEGAASKMQKQVCETSMSCLDLNMPLDEGEEGMDEDNNDHERDFVVENSDSWFSDFCDKMDEKVVFKPFDFDALAEQLLKSISIQFEKAFGSEFQLEVNYEVMAQILAAAWLADKKDAVDNWVESVLGKGFFEAQQKYHPVTKYVVKLVNCESIFVEEPDLGVCLPASINLK* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2400 1092 Gene3D - 656 915 IPR027417 -
Mtr5g2400 1092 Gene3D - 10 174 IPR036628 -
Mtr5g2400 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 1028 IPR027417 -
Mtr5g2400 1092 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1091 - -
Mtr5g2400 1092 ProSiteProfiles Clp repeat (R) domain profile. 8 179 IPR004176 -
Mtr5g2400 1092 SUPERFAMILY Double Clp-N motif 12 122 IPR036628 -
Mtr5g2400 1092 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2400 Mtr-Chr5 31419192 31424815 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2400 - - gmx:100804458 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2400 5 31419192 31424815 Mtr5g2400 5 31419192 31424815 ECH
Mtr5g2400 5 31419192 31424815 Mtr3g2171 3 35274305 35278949 ECH
Mtr5g2400 5 31419192 31424815 Mtr3g1691 3 29011167 29017537 ECH
Mtr1g1956 1 29007473 29011783 Mtr5g2400 5 31419192 31424815 ECH
Mtr3g1691 3 29011167 29017537 Mtr5g2400 5 31419192 31424815 PCT