Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1956 ATGAGAACGGGAAACTGTTCTTTGCAACAAGGCCTAACAACAGAAGCTGCAAACATAATAAAGCAAGCAATAACCCTAGCAAAGCGTCGTGGCCATGCTCAAGTAACACCACTTCATGTTGCAAATACGATGCTTAGTGTTACCAATGGATTATTAAGAACAGCTTGTCTTCAATCTCACTCTCACCCTCTTCAATGCAAGGCTTTAGAGCTTTGCTTCAATGTCGCACTCAATCGTTTGCCAGCGACGACTTGTAATAGCCCTATGTTGGGTTCTCATCATTCTCAATCTCAGTCTCAGTATCCTTCTATCTCAAATGCTTTAGTTGCCGCTTTTAAGCGCGCTCAAGCTCATCAACGTCGTGGATCGATTGAGAATCAACAACAACCGCTTTTGACGGTGAAGATTGAGCTTGAACAACTCATCATTTCAATTTTAGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCAGGGTTTAATAGTACTCAAGTGAAAACCAATGTTGAACAAGCTGTTTCTTTGGAAAATCCTTCTTCTATGAGTGGAAAATCAAAGGAAAACAATAATCAAACTCTTTCTTCTCATTCTCAAGAGATAGTTTCCAACAAAACATTGGTATTGGATCCAATTAGGGTTGATGATATCAATAGTGTTCTTGATAATTTAAAGATGAATCAAAGAAAGAGTATTGTTGTTGTTGGAGAATGTTTAGCTACTCTTGAAGGTGTAGTTAAAGGAGTAATGGAAAAGTTTGATAAAGGAGATGTTGATGAGTCTCTTAAAGGTGTTAAGATTATTTCTCTTTCTCTTTCTGATTTTGGTAATCTTTCAAGGGTAGAAATTGAGGAAAAAGTTGAAGAGCTTAAGGGACTTGCAAAAAAGAATTTTAATGGAAAAGGGTATGTTTTGTATCTTGGAGATCTAAAATGGTTGTTTGATTATAAGAAGAAACAAGGGATGATTAGAGGCTATTATTGTCCCTTAGATCACATGATAATGGAGATTGGAAAATTGGTTAATGGTGTTGAAAAAAGTGGAAAGTTTTGGTTGATGTGTATTGCTACTTTTCAAGGTTACATGAGATGTAAAAATGGAAATCCATCACTTGAAACTATTTGGAATCTTTATCCTATCACTATACCTGCTGGAAGCTTGAGATTGAGTCTCATCACTGAAAGTGGTTTAGAAAATGAGTCAACAAATGAGAAAGCTGAGAATAGAACAAGCTGGTTATTGCATGAAGGAGTAGGAGAAGATCAAATGATTCAAAAGCAACAACAAGCTTGTAACAGTGATTCATCAAGTTCAAGTCTTCCTGCATGGCTACAACAATACAAAAATGAAAATAAAGGAATTTCTTACAATGATCAGAATGTACAAGTAGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGTGGTTCAATCCAAAAACAACCCTATCATTGTGATGATAAAATTCTCACATTATCTTCAGTATCACCTTCTTCATCTACATCAGGTTTCTCCTATGAGCAGCAACAACATCCTAACAATGTGTCACAAAGCGACCACGACCGCCATTTTTGGACCTCTCAAAGTGGAACCAAGTCAAATGAACCTTCAAACCCTAATTCAACCATTTCTAGTGACCTTGTGGAAATGGAGCAACTAAACAATTTCAAAGAACTAAATTTAGAGAACATGAGAACTCTATGCAATGCTTTGGAGAAAAAAGTTCCATGGCAAAAAGATATAATACCGGAAATCGCAAGCACAGTTTTGCAATGCCGATCCGGATTGGTAAAAAGAAAAGGGAAAAACAATGACCATGATGCTAAAGAAGAAACATGGTTATTTTTCCAAGGTGTTGATTTGGAAGCTAAAGAGAAAATAGCAAAAGAATTGGCTAAGCTTGTTTTTGGGTCCTACAATAATTTCATTTCAATATCACTTAGTAGTTTTTCTTCAACAAGAGCTGATTCAAGTGAGGAAAGTAGAAACAAAAGAACAAGAGATGAAGCAAGTTGTACTTATATTGAAAGATTTGGTGATGCAATGTCAAGTAATCCTCATAGGGTTTTTCTAGTTGAAGATATAGAGCAAGTTGATTATTTTTCACAACTTGGTTTCAAAAGGGCTATTGAGAAAGGAAAAGTTTTGGATTCAAATGGTGAAGAGGTTTGTTTTTGTGATGCTATTATTATTCTAAGCTGTGAAAATTTTAGTTCAAGATCAAGAGTTTGTTCTCCTAAACAAAGATCATCTCAAGAAGACAAAGATGATGATATTAATGTTGCTACTTTGGAAGAGACAAGTTCTTATGTTTCTTTGGATTTGAATATTTCTATTGATGAGGATTACAATGAGGATGATAAATTGGTTGATGAAATTGGGCTACTTGAATCCGTAGACAGAAAGATTCTCTTCAAAATTCAAGAATTATGA 2427 0.3539 MRTGNCSLQQGLTTEAANIIKQAITLAKRRGHAQVTPLHVANTMLSVTNGLLRTACLQSHSHPLQCKALELCFNVALNRLPATTCNSPMLGSHHSQSQSQYPSISNALVAAFKRAQAHQRRGSIENQQQPLLTVKIELEQLIISILDDPSVSRVMREAGFNSTQVKTNVEQAVSLENPSSMSGKSKENNNQTLSSHSQEIVSNKTLVLDPIRVDDINSVLDNLKMNQRKSIVVVGECLATLEGVVKGVMEKFDKGDVDESLKGVKIISLSLSDFGNLSRVEIEEKVEELKGLAKKNFNGKGYVLYLGDLKWLFDYKKKQGMIRGYYCPLDHMIMEIGKLVNGVEKSGKFWLMCIATFQGYMRCKNGNPSLETIWNLYPITIPAGSLRLSLITESGLENESTNEKAENRTSWLLHEGVGEDQMIQKQQQACNSDSSSSSLPAWLQQYKNENKGISYNDQNVQVGELCKKWNSMCGSIQKQPYHCDDKILTLSSVSPSSSTSGFSYEQQQHPNNVSQSDHDRHFWTSQSGTKSNEPSNPNSTISSDLVEMEQLNNFKELNLENMRTLCNALEKKVPWQKDIIPEIASTVLQCRSGLVKRKGKNNDHDAKEETWLFFQGVDLEAKEKIAKELAKLVFGSYNNFISISLSSFSSTRADSSEESRNKRTRDEASCTYIERFGDAMSSNPHRVFLVEDIEQVDYFSQLGFKRAIEKGKVLDSNGEEVCFCDAIIILSCENFSSRSRVCSPKQRSSQEDKDDDINVATLEETSSYVSLDLNISIDEDYNEDDKLVDEIGLLESVDRKILFKIQEL* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1956 808 MobiDBLite consensus disorder prediction 170 198 - -
Mtr1g1956 808 PANTHER PROTEIN SMAX1-LIKE 3 1 807 - -
Mtr1g1956 808 MobiDBLite consensus disorder prediction 498 541 - -
Mtr1g1956 808 Gene3D - 9 174 IPR036628 -
Mtr1g1956 808 Gene3D - 203 382 IPR027417 -
Mtr1g1956 808 Coils Coil 552 572 - -
Mtr1g1956 808 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Mtr1g1956 808 Gene3D - 540 779 IPR027417 -
Mtr1g1956 808 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 807 - -
Mtr1g1956 808 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Mtr1g1956 808 Pfam Clp amino terminal domain, pathogenicity island component 25 51 IPR004176 -
Mtr1g1956 808 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1956 Mtr-Chr1 29007473 29011783 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1956 - - mtr:MTR_1g057150 1556.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1956 1 29007473 29011783 Mtr3g2171 3 35274305 35278949 ECH
Mtr1g1956 1 29007473 29011783 Mtr1g1956 1 29007473 29011783 ECH
Mtr1g1956 1 29007473 29011783 Mtr5g2400 5 31419192 31424815 ECH
Mtr1g1956 1 29007473 29011783 Mtr3g1691 3 29011167 29017537 ECH