Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1691 ATGCCGACGCCGGTAAGCACAGCGCGCCAATGTTTAACCGACGAAGCAGCGCGTGCACTAGACGAAGCAGTTTCTGTAGCGCGTAGACGTAGCCACCCTCAAACAACCTCTCTCCACGCCATCTCAGCCTTACTCTCTCTCCCTTCCAATGCTCTACGCACCGCCTGCTCATGCTCACGCGCCACCACTTTCCCTTACTCCCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCTGTCGGAGTCTCCCTCGACCGTCTCCCTACAACAAAAACCACCGCCGTCGTCACCTCCGGCGATGACGGCGGCCCACCGGTGTCAAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTACTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTTAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCACCACCACCATCTTCTAGATTCTTTCACCGTTCTTCACCTCCGGTTTTTTTATGTAATATTGAACCGGACCGGTTTGAAACGGTTCGGTTCGATGAGAATTCAAGAAGGGTTGTTGATGTTTTAGCTGGGAAGAGTGGGAGTAAGAGAAGTCCTCTTTTGATGGGTGTTTATGCAAAAACCGCTTTAAAAAGGTTTATAGAGTTAGTTCAAAGTGGAAAAGTTGGTTTTTTACCTAACGAGCTTGATGGGTTAAAAGTGGTTTCTATTGAGAATGAGATTTTTGAATTTTTTCTTGGAAATGGGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTGAACAAAATTTACATGCTGGTGTTGTTCTAAGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTTTGTTGTTTCAAGGTTAACAAGGTTATTAGAGGTTTATGGTGGGAAGATTTGGTTGGTGGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTTCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTGCCTGTGACATCTGCTACTCCTTCTATGGAAGGACTATACTCTAAATCCAGCTTAATGGGGTCCTTTGTTCCATTTGGTGGATTCTTTTCTACACCTTCTGATTTCAGAAATCCCAATCCATCTTTAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCAGCATCAACAAGCTTACCTTGGTTACAAAAGGTTAATGTGGATTCAGACAGAGGATTGGGTTTGGCAAAGACTAATGAAGATAATGCAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAACATCTTCATCAAAACAAATCATTACCTGAAATCAATATTTCCCAAACATTAACGGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAAGTCCATTTCCATCTAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAGCTGAACATGTACCGAAAGTTTCAAAATTAGACATACAAAATCCTCTCCTTAACCACAGGTCATCTTTGTCCCTTATTCCTGTCACCACGGATTTGGTTTTGGGAACAACATATACATCGGTTACTCATGAGCCAGATACCCCGAAACTAAATGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCGGGTCATAATTCCGATGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCTATCATCAATATTATGACACTTTGTAGATCAAGTGACGGAAAGCGCAGTGGATCGAATGTTAGAGCCGACACATGGTTTTCTTTCCTTGGACCAGATAGAGTCGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCTTAATCTCAGTGGATTTAAGCTCTAAGGACAGGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAGACAGTTGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCTATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATTAACAATTCAATATTTGTTGTGACCTCTTCTGTGTTCAAAGTTGGCGGCGTTTTTGATATGGAAAAGGAACCAAAGATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATATCAAATTGAATTATCACTTGGACATGCTTCCGAGGATATCTTTAGAAGCGGTAGCAAAAACGTGAGGGTTTCAAAGAGAAATGGAACATTTCTGAATAAAAGAAAGCTCTGTGAAACTGAAAGCAGTGATTCCAATGAGAAAGTAACTAGCAAGACAATGAAACATATCAAAGAGGCGTCGCGGTCGTATCTGGATTTGAATATGCCTCTGGAAGAGGAAGTGGAGGACGGTGATTGTGAAAATGAATCTGTAGTTCAAAATCATGAAACATGGTTAAATGACTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCGTTCGGATCAAATTTTGTGCTGGAAATTGATTACGAGGTCATGTCAGAGATACTTGCTGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTTGGAAATAGCTTTGTTGAGGCACAAAAGAAGTATCACAATGTAGCTGAATATGTCATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTAA 3243 0.3999 MPTPVSTARQCLTDEAARALDEAVSVARRRSHPQTTSLHAISALLSLPSNALRTACSCSRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAVVTSGDDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPSSRFFHRSSPPVFLCNIEPDRFETVRFDENSRRVVDVLAGKSGSKRSPLLMGVYAKTALKRFIELVQSGKVGFLPNELDGLKVVSIENEIFEFFLGNGSEEKMGLRFDEVGHLVEQNLHAGVVLSFGEIEVFVKNNNDDDVIDDGVVFVVSRLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSLTLCDTCNKKYEQEVADNYVNVGPSSSASTSLPWLQKVNVDSDRGLGLAKTNEDNASLNAKIFGLQRKWSDICQHLHQNKSLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQSPFPSKQMLPFSQPFDTTLSAKDKAEHVPKVSKLDIQNPLLNHRSSLSLIPVTTDLVLGTTYTSVTHEPDTPKLNDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNSDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSSDGKRSGSNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCLISVDLSSKDRFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVGGVFDMEKEPKIFPEERILEAKRYQIELSLGHASEDIFRSGSKNVRVSKRNGTFLNKRKLCETESSDSNEKVTSKTMKHIKEASRSYLDLNMPLEEEVEDGDCENESVVQNHETWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFGSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGNSFVEAQKKYHNVAEYVMKLVKCESIFVEEQATGVCLPARINLN* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1691 1080 Gene3D - 10 184 IPR036628 -
Mtr3g1691 1080 Pfam AAA domain (Cdc48 subfamily) 723 842 IPR003959 GO:0005524|GO:0016887
Mtr3g1691 1080 ProSiteProfiles Clp repeat (R) domain profile. 8 188 IPR004176 -
Mtr3g1691 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 842 IPR027417 -
Mtr3g1691 1080 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1080 - -
Mtr3g1691 1080 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1080 - -
Mtr3g1691 1080 SUPERFAMILY Double Clp-N motif 12 127 IPR036628 -
Mtr3g1691 1080 Gene3D - 655 976 IPR027417 -
Mtr3g1691 1080 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 723 741 IPR001270 GO:0005524
Mtr3g1691 1080 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 797 815 IPR001270 GO:0005524
Mtr3g1691 1080 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 830 844 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1691 Mtr-Chr3 29011167 29017537 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1691 - - gmx:100776148 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1691 3 29011167 29017537 Mtr3g1691 3 29011167 29017537 ECH
Mtr3g1691 3 29011167 29017537 Mtr3g2171 3 35274305 35278949 ECH
Mtr5g2400 5 31419192 31424815 Mtr3g1691 3 29011167 29017537 ECH
Mtr1g1956 1 29007473 29011783 Mtr3g1691 3 29011167 29017537 ECH
Mtr3g1691 3 29011167 29017537 Mtr5g2400 5 31419192 31424815 PCT