Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2171 ATGCCAACACCAGTATCATCAGCAAGACAATGCTTAACACCAGAAGCAATCCAAGCTTTAAACGACGCAGTAGCCGTCGCAAAACGCCGCGGACACGCACAAACAACCTCGCTTCACGCAATATCCGCTTTGTTATCTCTTCCATCTTCTTCAATCCTCCGCGACGCATGTTCTCGTTCGAGAAACTCGGCTTACTCACCACGCTTACAGTTCAAAGCACTTGATCTTTGTCTCTCAGTATCACTTGACCGTTCACCTTCTTCGCATAACAACGTTTCATCTGATCATGAACCACCGGTTTCGAATTCGCTTATGGCGGCGATTAAACGATCTCAGGCGAATCAACGGCGTCATCCTGATAATTTCCATTTCTATCATCAGCAGCAACAGTTGCAGAGTCAACAAACGTTTTCTGTTAGTTCTGTTAAAGTTGAGTTGCAGCATTTGGTTTTGTCAGTTCTTGATGACCCGGTTGTTAGTAGAGTTTTCGCTGAAGCTGGTTTTCGAAGCTCCGAGATTAAGCTTGCAATTCTCCGGCCACTTCCCCATCTCTTCCGTCGTGGTCCACCGGTTTTTCTGTGTAACCTGCCGGAGCAGCCACGCCGGGGGGCTGGGTTTGGATTTGGATTAGGCTTTCCGTTTTTATCTGGGGTTGGTGATGTAGATGAGAATTTCCGGAGAATTGGGGAGATTCTTGTTCGAAGTAAAGGGAAAAATCCTCTGCTTCTTGGAGCATGTGGTAACGATGCTCTGAGAAGCTTTACCGAGGCTGTGGAGAAGCGGAGAGAAGGAGTTTTACCTTTGGAACTTGACGGGTTGCGAGTGATTTGTATTGGGAAGGAGTTAGAGAGTGGTGACTGCGAGGTGGTGAGTTTGAAGTTAAAGCAGATTGCTGCCATAGTGGAGGAGTGTGTGGGACCGGGTGTTATAGTGAGTTTTGGAGAGTTGAAGTCTTTTGTCAACGATGATGGTGGGTTTGTTGAAGAATTAGGGAAATTGTTGAAGATTCATTATGATAAGTTTTGGTTAGCAGGTGCAGCTGATAGTTATGAAAGTTACTTGAAATTTCTGGGTAGGTTTCCTTCTGTGGAGAAAGATTGGGATTTGCAGATTCTTCCTATTACTTCTGTTAAGGCTTCTGAATCATATCAGAGACCCAGGTCCAGCTTAATGGATTCATTTGTACCACTTGGTGGCTTTTTTTCATCACAGTCCGATTTGAGAGGTCCACTAAATGGTTCATTTGGTTGTGTTCCTCATGATAATCAATTTGGTGAAAAATGTGAACATGAAGTTCTTGGTGCTTCAAATGAAAGATTTTCGGTTTCAGCTCCTGATCCATACCCATCTAACTTACCTCAATGGTTGAAGACTACAGAATTTGGCACAACAAAAACATTGACTGTTAAGACCAAAGATGATGGTGTTTTGGGGGATAGTAGTGAATCTTGTACGCCGCGTAATAACTTGGACAACATATGCCAAGTTTTGCATCAGCGAATTCCCAAGGCAAATACTTGTCATACTGTTGTGGGATTTCATTGTGCTGACAACAAAAACGAAGACGCCGACAACCACAGCAGCAAAATCGTAGACAAATCATCTAAAGAATACATCAATCTCAACTCTCATGCACCTGTTGGCGTTCAAACGATGTCTGCATTACAATCCAGCAATTCTTTTCCTTCTTTCTTCTTGGCAAAACAGGTGAAAAATATTCCAAATCTAACTGATATGTTCCAGAATGTAAAAGATCTTGAGTCAGGTGACCTAAGATCATGCAACATCTCCAGTTCAAGTGTGTCCGATGGTAGTCAACTATCTCCCACATCTGTGACTTCAGTAACAACAGATCTCGGCTTAGGTATATGCTCTTCTCCTACCAGCAATAAATTGACAAAAGCTGCAGTTCAATATACAATGGAGCCTCCAAAGGAAATCCCTAATCGATTTACTTCAAGCTTTAATTTGGATGAAGAGATTATCAGGATGCGTCCGTCCCAATCTTCATCCTGCTTAACTTTTGACTATTATCAACAAGCTGATGACGCTAGAAATCCCAAAGTTCTTTTTGAAGCTCTTTCCAAGGCGGTAAGATGGCAAGATGAAGCCATAAGGGCTATTATTAAAACAATAGTCTGTGGCTCAACAAAAAGTGCTAAAGACCATGGGTTAAATCAACGTGGGGACAAGTGGATGAATTTTGTTGGACCCGATAGGCATGGTAAAAAGAAAATTGCTGTTTCTCTAGCTGAATTACTGTATGGAAGCCGGGAAAACTTTACTTTTGTGGATCTGAGTTCCAAAGAAATGAATGGATGTAATGTGAAATTCAGAGGGAAGTCTCACCTTGATTTTCTCGTAGATGAGTGCTGCAAGAAACCATTGTCTGTGGTTTTCATTGAAAATGTTGATAAAGCGGATATAGTAGCTCAAAGCAGTTTGTCTCAAGCCATCAAGACAGGAAAAATCACAGACTCGCATGGACGAGAAGTTAGTGCAAACAATGCAATATTTGTTTTTTCTTTCTCAGGTTACCAAAATAGTTTGATGCAAACAAGGGAACCTTCCAACTATTCTGAGGAAAGAATGCTGAGTGTACGGGGCGGAGGTATCAAGATCAAAGTTGAACATATGGTTAGAGACATCAGAAACCAAAGCATCGGTGTACCTAACAATTCAATAAACATCATTCCTAATCTAAATTTCATAAACAAACGAAAATTGATTGGTGACAATGAACTTCACGATCCCCATTTACTCGCAGATGCGGCTAAAAGGGCACATACAACATCAAACCGGCTTTTAGATTTGAATCTTCCAGCTGAAGAGAATGAACAGAAACAGACAGATGATGGAAACTTTGAACATGTCTCAACTGAGAACCAAAACCTTTGGTTGCAAGATTTGTATAATCAGGTTGATGAAACAGTTGTTTTTAAACCATATGATTTTGATTCCCTTGATGATAGAGTGTTGAAATTGGTAAGAAATAACTTCAACAAAATTCTTGGATCCGAGTGTGCCTTACAAATCCAAACAGAAGTCATGGATCAATTGCTTGCAGCTGCATACGTCTCGGACAGTGATACGGAGGTGGAGAACTGGGTTCAGCAAGTTCTCTATGGTGGATTCACTGAAGTGCGGAGAAGATACAATCTCACCGCCAGTTCTATTGTGAAACTTGTTACATGTCCAGAGCAAGCTTCAAGTGTGCACCTTCCACCAAGGATAGTTTTAGATTGA 3246 0.4165 MPTPVSSARQCLTPEAIQALNDAVAVAKRRGHAQTTSLHAISALLSLPSSSILRDACSRSRNSAYSPRLQFKALDLCLSVSLDRSPSSHNNVSSDHEPPVSNSLMAAIKRSQANQRRHPDNFHFYHQQQQLQSQQTFSVSSVKVELQHLVLSVLDDPVVSRVFAEAGFRSSEIKLAILRPLPHLFRRGPPVFLCNLPEQPRRGAGFGFGLGFPFLSGVGDVDENFRRIGEILVRSKGKNPLLLGACGNDALRSFTEAVEKRREGVLPLELDGLRVICIGKELESGDCEVVSLKLKQIAAIVEECVGPGVIVSFGELKSFVNDDGGFVEELGKLLKIHYDKFWLAGAADSYESYLKFLGRFPSVEKDWDLQILPITSVKASESYQRPRSSLMDSFVPLGGFFSSQSDLRGPLNGSFGCVPHDNQFGEKCEHEVLGASNERFSVSAPDPYPSNLPQWLKTTEFGTTKTLTVKTKDDGVLGDSSESCTPRNNLDNICQVLHQRIPKANTCHTVVGFHCADNKNEDADNHSSKIVDKSSKEYINLNSHAPVGVQTMSALQSSNSFPSFFLAKQVKNIPNLTDMFQNVKDLESGDLRSCNISSSSVSDGSQLSPTSVTSVTTDLGLGICSSPTSNKLTKAAVQYTMEPPKEIPNRFTSSFNLDEEIIRMRPSQSSSCLTFDYYQQADDARNPKVLFEALSKAVRWQDEAIRAIIKTIVCGSTKSAKDHGLNQRGDKWMNFVGPDRHGKKKIAVSLAELLYGSRENFTFVDLSSKEMNGCNVKFRGKSHLDFLVDECCKKPLSVVFIENVDKADIVAQSSLSQAIKTGKITDSHGREVSANNAIFVFSFSGYQNSLMQTREPSNYSEERMLSVRGGGIKIKVEHMVRDIRNQSIGVPNNSINIIPNLNFINKRKLIGDNELHDPHLLADAAKRAHTTSNRLLDLNLPAEENEQKQTDDGNFEHVSTENQNLWLQDLYNQVDETVVFKPYDFDSLDDRVLKLVRNNFNKILGSECALQIQTEVMDQLLAAAYVSDSDTEVENWVQQVLYGGFTEVRRRYNLTASSIVKLVTCPEQASSVHLPPRIVLD* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2171 1081 ProSiteProfiles Clp repeat (R) domain profile. 8 183 IPR004176 -
Mtr3g2171 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1024 IPR027417 -
Mtr3g2171 1081 Gene3D - 673 887 IPR027417 -
Mtr3g2171 1081 PANTHER PROTEIN SMAX1-LIKE 8 1 1080 - -
Mtr3g2171 1081 Gene3D - 10 179 IPR036628 -
Mtr3g2171 1081 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2171 Mtr-Chr3 35274305 35278949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2171 - - gmx:100800606 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1956 1 29007473 29011783 Mtr3g2171 3 35274305 35278949 ECH
Mtr5g2400 5 31419192 31424815 Mtr3g2171 3 35274305 35278949 ECH
Mtr3g1691 3 29011167 29017537 Mtr3g2171 3 35274305 35278949 ECH
Mtr3g2171 3 35274305 35278949 Mtr3g2171 3 35274305 35278949 ECH