Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3159 ATGGGTTCCATTTCAGGGGATGAAGCAATGCAAGACCCCGCAGGCAGTGAGACTGAGGAGAGGATTCGTGTTTCTGTTCGTGTACGACCTCTGAATGATAAGGAGCTCACAAGAAATGACCTGTCTGAATGGGAATGCATTAATGACACAACCATCATGTACAGGAACAACCTTTCAGCTTCCGAGAGGTCCTTGTATCCAACAGCCTATACATTTGACCGAGTATTTAGGACTGATTGTCCAACAAGGCAGGTGTACGAAGAAGCATCTAAGGAAGTTGCTCTTTCTGTGCTCAGTGGCATCAACTCAAGCATTTTTGCATATGGACAAACAAGCAGCGGAAAGACATTCACTATGAGTGGTATAACTGAGTACACTGTAACAGACATTTTTAACTACGTAGAAAAGCACACAGAAAGGGAATTTGTTTTGAAGTTCTCAGCTATGGAAATCTATAATGAATCTGTCAGGGACCTCCTTAGTGCTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGAAAGGGACAGTCGTAGAGAAACTCACTGAGGAAACTTTGCGGGACTGGGACCATTTTACAGAACTCATTTCTTTCTGTGAAACACAAAGGCAGATAGGAGAGACATCCCTGAATGAAGCAAGCTCCAGATCACATCAGATTCTCAGACTGACCGTTGAAAGTTCTGCACGTGAGTTTCTTGGAAATGGCAAATCGAGCTCTCTTACGGCTTCTGTGAATTTTGTTGATCTTGCTGGAAGTGAGCGTGTATCCCAAACTAATTCAGCTGGCACAAGGTTGAAAGAGGGATGCCACATAAATCGTAGCTTACTGACTCTAGGAACTGTTATCCGAAAACTAAGCAAGGGTCGAAATGGACATATCCCTTTCAGAGATTCCAAGCTAACCCGCATACTGCAGTCCTCATTAGGAGGCAACGCCAGAACGGCAATCATCTGTACCATGAGCCCTGCACGGAGCCATGTTGAACAAAGCAGAAACACCCTCTTATTTGCAAGTTGTGCTAAGGAAGTGGCAACTAATGCAAAAGTCAATGTAGTGGTGTCTGATAAATTGTTGGTGAAACAATTGAAAAGAGAGTTGGCTAGGCTGGAAAGTGAGTTGAGAAATTCAGGGTCAACCGGCCTTAAATCTGATTCTGCAGCATTGCTGAGGGAAAAAGAACTCCAAATTGAGATGTTAAAGAACGAGGTAATGGATCTGACTATGCAGCGGGACCTTGCTCAGTCTCAAATTAAGGACATGCTTCAAGTTGTTGGAGACGACATGTCCTCCACTGATTTCGAAAGTTCGGATCCTCAATATCCCAAATTACGTGTGCGGTGTTCATGGGACTTCGATAGCCAGGCAGTAGAACCAAATTTATTAAGTACTGACGGCTTGGAGAGTGTCAAATCTTTTGATGCTTCTCAATATTCAGATGGACATAGTTTTAGTTCTGAGGAGAACTATTTCCAACTCCCTGATCTGGAAAAAAGTCTTCCCATCATCAGGAATTCTTCCCCAGGGCTGTCTGTTTCAAGTCTCGATTCTGTAAGAAATGATTTAGATCAGAAGACAGTTGAAGAACAGCACGATGAAAATTTAGGCGACCATTGTAAGGAAGTTATCTGCATTGAGTCAGAGGACCTAATTACGGACACATATCCAGACTCAAATCCAGCAGATGTAAGTCAAGACATCGACACAGACTCTAATGCGTCATCTCCAGGGGCAAATACGGCTGTCTCAGGATTAACCGAAGCTGATAACATAGACAAAGAAAATCTAGATTTGTGTTCATCTGGTATAAAGGAAAACAATGAAATGAACCGTTCGCCCCAAGGTTCTGTTCTTCCCTCTCCTAAGGAATTATGTCCATGGCTGGTAGAAAAAAGTGCATCTAATTCTAAACCCTGGAAATTTACCAGAAGTAGAAGTTGTAAAGCAAGTCTCATGAAGGATTCATCTTCAGATTGGTTTGATCAGGAAGAAATTATTCAGAACACACACCCAATAGGGATCGAAAAAGACTACATTGGAATACCTGAGGGCTTTCAAAGGAGGACCTGTACACTAAACTATAATGCCAATGCTGAGAGGTTATCATGGACGGGTGGTTATGGGAATGCTATGGGAAATACTTCTGTCGATTTAGACATTATAAAATCCTACACCGATAAGGAAAGTTATGACGATAGTGATTTATCTCCAGCAAGAAAGTCAAAGAAAGATCTTGGAAGTTCAAATCTACTGGCGGACCATGAGGTTTCAGAGACAGAATCACAGTCGGATATTTCTGCAAAGAAGTTCAAAGATGTTGGCTTGGACCCATTGCAATCTGATGAGGAAAAGCAATTGCACTGGTCTTCAGAATTTGAACGGCTGCAACGAGAGATTATTGAACTCTGGCACGCTTGTAATATTTCATTGGTTCACAGGACTTACTTTTTCCTTCTATTCAAAGGAGACCCGTCAGATTCTATCTATATGGAGGTAGAGCTCAGAAGGCTGTCCTATCTCAAGCAAAATCAGCCTATGGAAAATGGACGAACCCTTACCCCTGAATCAAGCACGAGATGTCTTCGAAGAGAGAGACAGATGTTGAGCAAGCAGATGCATAGGAGGCTGTCAAAATCTGAAAGAGACAACCTCTATTTGAAGTGGGGTATAAGTAAGAGTTCAAAGCATAGAAGGTTGCAATTGGCCCACCGCCTGTGGTCTGAAACAGAGGACATGAACCATATTAGAGAGAGTGCCACCATTGTGGCAAAGCTGGTTGGTTCAGTAGAGCCAGATCAGGCTTTTAAGGAGATGTTTGGGCTCAACTTCGCCCCACGGGGCAGAAGAAAGAAATCTTTTGGTTGGACCTCCAGCATGAAGCATATTTTGTGA 2895 0.4294 MGSISGDEAMQDPAGSETEERIRVSVRVRPLNDKELTRNDLSEWECINDTTIMYRNNLSASERSLYPTAYTFDRVFRTDCPTRQVYEEASKEVALSVLSGINSSIFAYGQTSSGKTFTMSGITEYTVTDIFNYVEKHTEREFVLKFSAMEIYNESVRDLLSADSTPLRLLDDPEKGTVVEKLTEETLRDWDHFTELISFCETQRQIGETSLNEASSRSHQILRLTVESSAREFLGNGKSSSLTASVNFVDLAGSERVSQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAKVNVVVSDKLLVKQLKRELARLESELRNSGSTGLKSDSAALLREKELQIEMLKNEVMDLTMQRDLAQSQIKDMLQVVGDDMSSTDFESSDPQYPKLRVRCSWDFDSQAVEPNLLSTDGLESVKSFDASQYSDGHSFSSEENYFQLPDLEKSLPIIRNSSPGLSVSSLDSVRNDLDQKTVEEQHDENLGDHCKEVICIESEDLITDTYPDSNPADVSQDIDTDSNASSPGANTAVSGLTEADNIDKENLDLCSSGIKENNEMNRSPQGSVLPSPKELCPWLVEKSASNSKPWKFTRSRSCKASLMKDSSSDWFDQEEIIQNTHPIGIEKDYIGIPEGFQRRTCTLNYNANAERLSWTGGYGNAMGNTSVDLDIIKSYTDKESYDDSDLSPARKSKKDLGSSNLLADHEVSETESQSDISAKKFKDVGLDPLQSDEEKQLHWSSEFERLQREIIELWHACNISLVHRTYFFLLFKGDPSDSIYMEVELRRLSYLKQNQPMENGRTLTPESSTRCLRRERQMLSKQMHRRLSKSERDNLYLKWGISKSSKHRRLQLAHRLWSETEDMNHIRESATIVAKLVGSVEPDQAFKEMFGLNFAPRGRRKKSFGWTSSMKHIL* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3159 964 Coils Coil 354 381 - -
Lja4g3159 964 PANTHER CENTROMERE PROTEIN E 2 964 - -
Lja4g3159 964 MobiDBLite consensus disorder prediction 555 583 - -
Lja4g3159 964 CDD KISc_CENP_E 22 345 - -
Lja4g3159 964 ProSitePatterns Kinesin motor domain signature. 244 255 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja4g3159 964 Coils Coil 384 418 - -
Lja4g3159 964 Gene3D Kinesin motor domain 13 376 IPR036961 -
Lja4g3159 964 PRINTS Kinesin heavy chain signature 100 121 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 PRINTS Kinesin heavy chain signature 209 226 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 PRINTS Kinesin heavy chain signature 295 316 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 PRINTS Kinesin heavy chain signature 245 263 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 SMART kinesin_4 19 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 ProSiteProfiles Kinesin motor domain profile. 21 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 MobiDBLite consensus disorder prediction 729 750 - -
Lja4g3159 964 PANTHER ATP-BINDING MICROTUBULE MOTOR FAMILY PROTEIN 2 964 - -
Lja4g3159 964 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g3159 964 Pfam Domain of unknown function (DUF3490) 792 946 IPR021881 -
Lja4g3159 964 MobiDBLite consensus disorder prediction 729 764 - -
Lja4g3159 964 Pfam Kinesin motor domain 27 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3159 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 377 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3159 Lja-Chr4 59714849 59722865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3159 13 375 Miscellaneous Gene Families AT5G06670 42.276 1.48e-81 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3159 K11498 - gmx:100775190 1383.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0532 2 4790951 4796974 Lja4g3159 4 59714849 59722865 ECH
Lja1g3534 1 44027583 44033561 Lja4g3159 4 59714849 59722865 ECH
Lja4g3159 4 59714849 59722865 Lja4g3159 4 59714849 59722865 ECH
Lja1g2342 1 27137683 27143328 Lja4g3159 4 59714849 59722865 ECH
Lja2g0532 2 4790951 4796974 Lja4g3159 4 59714849 59722865 PCT