Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3534 ATGTCGTCGTCGCCGGTAGGAGTCAGAGAGGAGCAAGGAAAAACGGCTCAATCAAATGGCCAGCAGGAAGAGAGAATTTTCGTTGCCATCAGGGTGAGGCCTTTGAACGAGAGAGAAAGGGCAAGGCATGATGTGTCCGATTGGGAATGCATTTCTGACCACACCATCAGGTTCAAGAACAACGGCCTCGCCGAACAGCATGCCAGCACATTTGACAGGGTATTTGGGGAAAGGTTCACCACACAGCAGGTGTATGAGCAAGGGATTAAGGAAGTTGCCCTTTCAGTAGTTAGGGGGATCAACTCTAGCATTTTTGCTTACGGGCAAACGAGCAGTGGAAAGACATACACAATGACTGGAATTACTGAATATGCTATAAAGGATATATATGAATACATAGAGAAGCATAGAGAGAGGGAATTTGCTGTGAAGTTCTCGGCCATGGAGATCTATAATGAAGCTGTGAGAGACCTTCTCAATGCAAATGCTACTTCACTAAGAGTCCTTGATGATCCAGAGAAAGGGACTGTTATTGAGAAACTCACTGAGGAGACTCTGACAGAGAGGAGCCGATTGCAACAGCTCCTTTCAATATGTGCAGCTGAAAGAACAACGGAAGAGACAGCCATGAATGAAGCTAGCTCCAGATCACATCAAATTCTTCGACTGACAGTTGAAAGTAATCCTGGTAATTATGTAGGCACTGCAAGATGTGGCACTCTTACCGCCAGTGTGAATTTTGTTGATCTTGCAGGAAGTGAGCGTGCTTCTCAATCATTATCAGCTGGCACAAGATTGAGAGAAGGTAGCCACATAAACCGCAGTTTACTGACCCTTGGAACTGTAATTCGGAAACTAAGCAAAGGAGGAAATGGACACGTACCTTATAGAGATTCTAAGCTTACTCGCATTCTGCATAACTCTTTAGGAGGAAATGCCAGAACAGCCATCATTTGTACCATTAGCCCTGCACGCAGCCAGGCTGAGCAATCAAAAAACACTCTATTTTTTGCTGGCTGCGCAAAACAGGTAGCTACTAATGCTCAGGTCAATGTGGTGATGTCAGACAAGATTTTGGTAAAGCAACTACAAAAGGAATTGGCTAGAATGGAGAATGAGTTGAGGAGCTTCAATAGCATCATACTTAAGGAAAGAGAACTCCAGATTGAACAGATGGATAAAGAGATCAAAGAATTGACTCGGCAACGTGATCTCTTTCATTCTCATATTGAAAATTTGGTCCAGTCAGCTGGGAAAGATCGGCTTATAAGAGTAGATAAAGATTGGCCCTCAGAAACGTCAAGTGTTGCTACTAATCTATGTTCTGAGAGAGACAGCAGATCTGAGAATCTTGACAGAACAACTTCCAGTTTGTACCTTTTGAATGAGCAACCTGAGAATTCTGAAGACAACTTTCTCCTGGATGGCTGTCCTCCCACGTTTGTTGAGGCTGAATCGCCTGATCCATGTCAAGGTTGGGAGGAGATAGCTAGCAGAGCTGAATCTGAAGCTAAATCTGAAGATAACTGCAAGGAAGTTCCATGTGTTGAAATAAAAGAAGTGGAAACAGACCACAAAACAAATGTTAACACGTCCATTACTTCTTTTGAAGAAAAAGAAGAAAATTTAATACCAGTTGCCGACGAAGATGCTAAATCATCATCAGGGAATGGCCAAAATGTTCGAGATGTACTGCAGCAAAAAACTGAGGACCACAAAACAAATGTTAACACGTCCATTACTGCTTCTGAAGAAAAAGGAGAAAATTTAATACCAGGTGCGGACGAAGATGCTAAATCATCATCAGGGAATGGCCACAGTGATCGAGATGTACTGCAACAAAAAACTGAGGACCACAAATTAAGTGTTAACATATCCATTCCTTCTTTTGAAGAAGAAGGAGGAAATTCACACATGATGATACCAGTTGCGGAGGAAGATGCCAAATCAACATCAGGGAATGGCCATAGTGATCAAGATGCACTGCGGCAGAAAACTGAGGACCACAAAACAAGTGCTAACACGTCCACTCCTGCTTTTGAAGAAGAAGGAGGAAATTCACCCACAATACAAGTTGTGGAGGAAGATGCTAAATCATCCCGAGAGAATGGGCATGTTGATCAAGATGCACTGCAGCAAAAAACTCAGGACCTTGAAAGGAACAACGACCATCTGGTGGACCTCTCAGAGAAATCCAATGGGTCTTCTGAATCCAGACCACACATTATGACTGCCATGCCTTCTCCTCAAACACATAAAATGTCTCAAGATGCTTCATTGCATCCACAGGTCAGTAAGGTGGAGGAACAGAATGTGTCACCTTCTCGATTTAGTAAGCTGGACCAGGAATCCGCATCACCCCACCAGTTTGATGAAGACGACCTTAAAACTATGTCACCACTTTTTCTTGATAAGCAAGAGCTCAAAACTAGGTCACCTCCTCAACTTGAAGAGCTGGATTCGTTCACATTATCAGATGGGGTCGAAAGGGAATATTCTTCAAACATGATGTGCTTTGATGAGAAGCAATCTCAACCAAAGTTACATGCTAAAAAAAGAAAATATTCCAGAAAGTATTCTGTAGTTCCCATGATGGATGCTTCAGTTGAAGATGAAGAGTCTGTTTTGGATTCTGATACGGAAGATACTTCCAGCGTCATCAATTTTGTTGTAAAAATGAATCAAAGGGCAAAGACAAAACCAACACAAAAACCATTCAGCGAGGACTTCGATGATCTAATGGCACATGTGAACAAAGTAAAAGGTGCCAATTTCAATGGAATTTCGGGGCCTTTGATGCCTTCTAAATTTGAGACGCAGCAGAGAGATATAATCAAACTTTGGGATGCATGTAATGTGCCATTGGTACATAGATCCTATTTTTTCCTTCTCATCGAAGGTGAACTTCCCGATTCTGTGTACTTGGATGTAGAGCTCAGACGTTTGTCCTTTCTGAAGGACGCTTTTTCTAGTGGCATCACAGGAGGTGGTCTTGATGTCACTCCTAATTCAAGCCTGTTGTCTCTGAATCGTGAGAGGAAAATGCTAAGTAAGCAAGTGCATAAGAAGTTTTCAAAGAAGCAAAGAGAGGAACTTTACCGGAAGTGGCGTATCGATTTGAAGACTAAGCACAGAAGCATACAACTAGCATGGCTCCTATGGACAAATACAAAAGACCTGAACCACGCTAGAGAAAGTGCAGCGCTCGTAGCGAAGCTGGTTGGTTTAATAAACTCGAGTGAGACTCCAAAGAAAGCTTTTGGACTTGGCTTCCTAGCCCGACACAAGAGCAGAAAATCCCTTAGCTGGAAGGACACAATGTCTACTATTTAA 3333 0.4272 MSSSPVGVREEQGKTAQSNGQQEERIFVAIRVRPLNERERARHDVSDWECISDHTIRFKNNGLAEQHASTFDRVFGERFTTQQVYEQGIKEVALSVVRGINSSIFAYGQTSSGKTYTMTGITEYAIKDIYEYIEKHREREFAVKFSAMEIYNEAVRDLLNANATSLRVLDDPEKGTVIEKLTEETLTERSRLQQLLSICAAERTTEETAMNEASSRSHQILRLTVESNPGNYVGTARCGTLTASVNFVDLAGSERASQSLSAGTRLREGSHINRSLLTLGTVIRKLSKGGNGHVPYRDSKLTRILHNSLGGNARTAIICTISPARSQAEQSKNTLFFAGCAKQVATNAQVNVVMSDKILVKQLQKELARMENELRSFNSIILKERELQIEQMDKEIKELTRQRDLFHSHIENLVQSAGKDRLIRVDKDWPSETSSVATNLCSERDSRSENLDRTTSSLYLLNEQPENSEDNFLLDGCPPTFVEAESPDPCQGWEEIASRAESEAKSEDNCKEVPCVEIKEVETDHKTNVNTSITSFEEKEENLIPVADEDAKSSSGNGQNVRDVLQQKTEDHKTNVNTSITASEEKGENLIPGADEDAKSSSGNGHSDRDVLQQKTEDHKLSVNISIPSFEEEGGNSHMMIPVAEEDAKSTSGNGHSDQDALRQKTEDHKTSANTSTPAFEEEGGNSPTIQVVEEDAKSSRENGHVDQDALQQKTQDLERNNDHLVDLSEKSNGSSESRPHIMTAMPSPQTHKMSQDASLHPQVSKVEEQNVSPSRFSKLDQESASPHQFDEDDLKTMSPLFLDKQELKTRSPPQLEELDSFTLSDGVEREYSSNMMCFDEKQSQPKLHAKKRKYSRKYSVVPMMDASVEDEESVLDSDTEDTSSVINFVVKMNQRAKTKPTQKPFSEDFDDLMAHVNKVKGANFNGISGPLMPSKFETQQRDIIKLWDACNVPLVHRSYFFLLIEGELPDSVYLDVELRRLSFLKDAFSSGITGGGLDVTPNSSLLSLNRERKMLSKQVHKKFSKKQREELYRKWRIDLKTKHRSIQLAWLLWTNTKDLNHARESAALVAKLVGLINSSETPKKAFGLGFLARHKSRKSLSWKDTMSTI* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3534 1110 MobiDBLite consensus disorder prediction 724 792 - -
Lja1g3534 1110 MobiDBLite consensus disorder prediction 728 784 - -
Lja1g3534 1110 ProSitePatterns Kinesin motor domain signature. 243 254 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g3534 1110 MobiDBLite consensus disorder prediction 566 623 - -
Lja1g3534 1110 CDD KISc_CENP_E 26 344 - -
Lja1g3534 1110 Coils Coil 353 380 - -
Lja1g3534 1110 Coils Coil 382 402 - -
Lja1g3534 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 379 IPR027417 -
Lja1g3534 1110 PRINTS Kinesin heavy chain signature 208 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 PRINTS Kinesin heavy chain signature 244 262 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 PRINTS Kinesin heavy chain signature 99 120 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 PRINTS Kinesin heavy chain signature 294 315 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 PANTHER CENTROMERE PROTEIN E 19 1109 - -
Lja1g3534 1110 Pfam Kinesin motor domain 31 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 Coils Coil 711 731 - -
Lja1g3534 1110 PANTHER KINESIN-LIKE PROTEIN KIN-7J 19 1109 - -
Lja1g3534 1110 Pfam Domain of unknown function (DUF3490) 936 1093 IPR021881 -
Lja1g3534 1110 ProSiteProfiles Kinesin motor domain profile. 25 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g3534 1110 SMART kinesin_4 23 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g3534 1110 MobiDBLite consensus disorder prediction 571 585 - -
Lja1g3534 1110 MobiDBLite consensus disorder prediction 647 708 - -
Lja1g3534 1110 Gene3D Kinesin motor domain 15 375 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3534 Lja-Chr1 44027583 44033561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3534 21 405 Miscellaneous Gene Families AT5G06670 39.594 3.15e-76 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3534 K11498 - pvy:116145969 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3534 1 44027583 44033561 Lja2g0532 2 4790951 4796974 ECH
Lja1g3534 1 44027583 44033561 Lja4g3159 4 59714849 59722865 ECH
Lja1g3534 1 44027583 44033561 Lja1g3534 1 44027583 44033561 ECH