Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0532 ATGGGGTCTATTGGAGGGGAGGAGGCAATTCAAGATCCTTCAGGCCATGAGGAGAGAATTCATGTTTCGGTCCGCCTTCGTCCTCTCAATGATAAGGAACTTGCAAGAAACGATGTTTCGGACTGGGAATGCATCAATGACAATACCATCCTATACAGGAGCGATTTTTCAGCTTCTGAAAGGTCCCTTTATCCAACAGCATACTCATTTGACAAAGTTTTTGGGTCAGATTGCTCCACTAGGCAGGTGTATGAAGAAGCAGCAAAGGAAGTTGCTCTTTCTGTTGTCAGCGGCATCAACTCAAGCATTTTTGCATATGGACAAACAAGCAGCGGAAAGACATTCACCATGAGTGGTGTAACTGAATGCACTGCAGCAGACATTTTTAACTACATAGAAAAGCACGTGGAAAGAGAATTCACTTTGAAGTTTTCAGCAATTGAGATTTATAATGAATCTGTTAGAGACCTCCTTAGTCCTGATTTTACTCCTCTCAGACTTCTTGATGATCCAGAGAAAGGGACAGTTGTTGAGAAACTGACAGAGGAAACTATAATTGACTGGAACCATTTTGCAGAACTAGTATCTTTCTGTGAAGCTCAGAGGCAGATAGGGGAGACATCATTGAATGAAGCAAGCTCCAGATCTCATCAGATTCTCAGACTGACAATTGAAAGTTCTGCACGTGAATTCCTTGGAAATGACAAGTCTAGCTCTCTTTCAGCTTCAGTGAATTTTGTTGATCTTGCCGGAAGTGAGCGAGCATCCCAAGCCAATTCAGCTGGTACAAGATTGAAAGAGGGTTGTCATATAAATCGAAGTTTACTAACTCTTGGAACTGTTATCCGCAAACTCAGCAAGGGAAGAAATGGACATGTTCCTTTCAGAGATTCAAAGCTAACCCGCATATTGCAGTCGTCATTAGGAGGCAATGCTAGGACTGCAATCATCTGCACCATGAGCCCTGCACGGAGCCATGTTGAGCAATCCAGAAACACCCTCTTATTTGCAAGCTGTGCTAAAGAAGTGGCAACTAATGCACAAGTGAATGTTGTGATGTCTGATAAAGCACTAGTCAAGCAATTGCAGAAAGAGTTGGCTAGAATGGAAAGTGAATTGAGAATTTTAGGGTCTGCCCACCCTAACTCTGATTCTGCAGCATTGTTGAGAGAAAAGGACCTCCAAATTGAGATGTTAAAGAACGAGGTAAAAGAGGTGACCTTGCAGCGGGATCTTGCACAATCTCAAATTAAAGACATGCTCCAAGTAGCAGGAGATAATATGTCTTCAATAGAATTGGCAAATCTTCAGGAAACTTTGGATCATCAATATCCCAAATTACGCGTAAGAAACACATGGGACATTGAAAATCGGAAAGAGGAACCGAATGTGTTGATTCTTGACTGTGAGGAGAGTGTTAGGTCTTTTGATGCATCTCAATATTCAGAAGGACATAGTTTTAGTTCTGATGAGAACTTGTTCCAACTCACTGACCTTGACAAGAATCTTGAGAGCAGAAGTTCTTCCCCAGGGCTGCCGGTTACAAGCGTCGATGTGCAGAGCAATATGTATCAGAAGAACATTGAAGATCAGAATGAAGTAGACAGTTGTAAAGAAGTTAGGAGTATTGAGTTAGAAGACCCGATTACAAACACATATACACACTCAAACCCGGAAGCTTTAAGATCAAGTACATACACTGATTCTAATGCAACATCTCCTTGTGAAAATACAGCTGCATCAGGATTGATTGCAGTTGATAATGGTGACAAAAGATTGAACCATAAGCGCCAAGAGATAGTTCTTCCCTCTCCAGAAAAAAATTCCTCTTTGCTGACAAGAAGTAGTTCTATATCCTTGAGGCTGAGCCGAAGCAGTAGTTGTAAAGCAAGTCTCTTGGGGAATTCATCTTCAGATTGGTTTGAGGAGGATGACGCAATTCAGAACACACCACCCACAGGGAATGAAAAAGACTTTGTTCGGAGACCTGAGGGCTTTCAGTGGAAGGTTTATAGACTAAGTTATGATGAAAATGCAGAGAGGCCTACACGAAACGGCCATGGGAGTTCTGCTGAACGTTCTCCAGTCGATGTCCAGAATGTAAAATCCTCCACCGACAAGGAAAGTGAGAGTAATGGTTCATTAACTCCACAAGGAAAGGAGACAGAAAATCTCAAGAGTTTGAATTTACTTGCTGACCATGAGGTTCCGGGGACAGGACTGGATCCCTCCATGTCTACAAAGAATTTCAAAGATGTTGGCTTGGACCCAATGCAAGCTGACAATTCAGACTGGCCTTCAAAATTTAAGGATCTGCAAAAAGAGATTGTTGAACTCTGGGATGCTTGCAATGTTTCCTTGGTTCACAGGACTTACTTTTTCCTTCTATTCAAAGGGGATCCATCAGATTCTATTTATATGGAGGTAGAGCTGAGAAGGCTATCATATCTTAACCAAACTTTCTCACAAGGCAATAAGACCGTGGAAGATGGACGAACCCTGACCCCTGAGTCAAGCATGAGATCTCTTAAAAGAGAGAGGCAGATGTTGAGCAAGCAAATGCAGAAGAAGCTATCTAAATCTGAAAGAATGAATCTATATTTGAGATGGGGTCTTCGTTTGAGCACGAAGCACAGGAGTTTGCAGCTGGCTCATCGTCTGTGGTCCGACACAAAGGACATGGAGCACATTAGAGATAGTGCAGCCCTTGTTGCAAAGCTGGTTGGTTCGGTAGAGCCAGAGCAAGCTTTTAAGGAGATGTTTGGACTCAACTTTGCCCCGCGGCCCTCAAGTAGGAAATCTTTTGGTTGGACAGCCAGTGTGAGGCATCTTTTGTGA 2838 0.4274 MGSIGGEEAIQDPSGHEERIHVSVRLRPLNDKELARNDVSDWECINDNTILYRSDFSASERSLYPTAYSFDKVFGSDCSTRQVYEEAAKEVALSVVSGINSSIFAYGQTSSGKTFTMSGVTECTAADIFNYIEKHVEREFTLKFSAIEIYNESVRDLLSPDFTPLRLLDDPEKGTVVEKLTEETIIDWNHFAELVSFCEAQRQIGETSLNEASSRSHQILRLTIESSAREFLGNDKSSSLSASVNFVDLAGSERASQANSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARMESELRILGSAHPNSDSAALLREKDLQIEMLKNEVKEVTLQRDLAQSQIKDMLQVAGDNMSSIELANLQETLDHQYPKLRVRNTWDIENRKEEPNVLILDCEESVRSFDASQYSEGHSFSSDENLFQLTDLDKNLESRSSSPGLPVTSVDVQSNMYQKNIEDQNEVDSCKEVRSIELEDPITNTYTHSNPEALRSSTYTDSNATSPCENTAASGLIAVDNGDKRLNHKRQEIVLPSPEKNSSLLTRSSSISLRLSRSSSCKASLLGNSSSDWFEEDDAIQNTPPTGNEKDFVRRPEGFQWKVYRLSYDENAERPTRNGHGSSAERSPVDVQNVKSSTDKESESNGSLTPQGKETENLKSLNLLADHEVPGTGLDPSMSTKNFKDVGLDPMQADNSDWPSKFKDLQKEIVELWDACNVSLVHRTYFFLLFKGDPSDSIYMEVELRRLSYLNQTFSQGNKTVEDGRTLTPESSMRSLKRERQMLSKQMQKKLSKSERMNLYLRWGLRLSTKHRSLQLAHRLWSDTKDMEHIRDSAALVAKLVGSVEPEQAFKEMFGLNFAPRPSSRKSFGWTASVRHLL* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0532 945 Pfam Kinesin motor domain 25 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 Gene3D Kinesin motor domain 10 374 IPR036961 -
Lja2g0532 945 MobiDBLite consensus disorder prediction 688 721 - -
Lja2g0532 945 Pfam Domain of unknown function (DUF3490) 768 927 IPR021881 -
Lja2g0532 945 PANTHER ATP-BINDING MICROTUBULE MOTOR FAMILY PROTEIN 2 945 - -
Lja2g0532 945 Coils Coil 389 416 - -
Lja2g0532 945 Coils Coil 352 379 - -
Lja2g0532 945 MobiDBLite consensus disorder prediction 642 661 - -
Lja2g0532 945 ProSiteProfiles Kinesin motor domain profile. 19 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 ProSitePatterns Kinesin motor domain signature. 242 253 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja2g0532 945 MobiDBLite consensus disorder prediction 679 721 - -
Lja2g0532 945 Coils Coil 840 860 - -
Lja2g0532 945 CDD KISc_CENP_E 20 343 - -
Lja2g0532 945 SMART kinesin_4 17 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 PRINTS Kinesin heavy chain signature 293 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 PRINTS Kinesin heavy chain signature 243 261 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja2g0532 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 378 IPR027417 -
Lja2g0532 945 MobiDBLite consensus disorder prediction 549 574 - -
Lja2g0532 945 PANTHER CENTROMERE PROTEIN E 2 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0532 Lja-Chr2 4790951 4796974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0532 13 405 Miscellaneous Gene Families AT5G06670 41.147 8.48e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0532 K11498 - gmx:100809766 1410.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0532 2 4790951 4796974 Lja4g3159 4 59714849 59722865 ECH
Lja1g3534 1 44027583 44033561 Lja2g0532 2 4790951 4796974 ECH
Lja2g0532 2 4790951 4796974 Lja2g0532 2 4790951 4796974 ECH
Lja1g2342 1 27137683 27143328 Lja2g0532 2 4790951 4796974 ECH
Lja2g0532 2 4790951 4796974 Lja4g3159 4 59714849 59722865 PCT