Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2342 ATGGGGGTTGTTGCTGGAGAAGGGCTAGTCAAATGGGAGAAGATGGAAGGAGTGGGTGGCTGTGAAGAGAAAATTCTGGTGTTAGTCAGGCTGAGGCCTTTGAGTGAGAAGGAAACTGTTGTGAATGAAGTGGCAGATTGGGAATGCATCAATGACACTACCATCTTATACCGAAACACACTCCGGGAAGGTTCCACATTTCCCAGTGCCTACACATTTGACAGAGTATTTCGGGGTGATTGTTCCACCAAGCAGGTATATGAGGAAGGGGCCAAAAACATTGCTCTTTCAGTTGTTAATGGGGTTAACTCAAGTATTTTTGCATACGGGCAAACAAGTAGTGGAAAGACATACACGATGATTGGAATAACTGAATATGCTGTAGCAGATATTTTTGACTACATAAACAAGCATGAAGAAAGAGCATTTGTATTGAAGTTCTCAGCAATTGAAATTTACAACGAAATTATTAGCGACCTCCTTAGCACTGAGAACACTCCACTAAGGTTGCGTGATGATCCTGAGAAAGGACCTGTCATAGAGAAACTTACTGAGGAAACTCTACGGGACTGGGTGCATTTGAAAGAGCTATTATCATTCTGTGAAGCACAAAGACAGGTAGGGGAGACATACCTCAATGAAAAGAGTTCTAGATCACATCAGATTATCAGATTGACAATTGAAAGTTCTGCCAAAGAATTTTTAGGTAAAAGCAACTCAGCCACCCTGGCAGCTAGTGTGAATTTTGTTGATTTGGCAGGGAGTGAGCGTGCATCTCAGGCATTATCAACTGGGTCTAGACTGAAAGAAGGTTGTCATATAAACCGGAGTTTACTCTCTCTTGGAACGGTCATTCGTAAGCTTAGTAAGGGAAGACAAGGATACATTAATTACAGAGATTCTAAGTTGACACGCATACTGCAGCCTTCCTTAAGTGGAAATGCTAGAACAGCCATCATTTGCACTTTAAGTCCTGCACGGAGCCATGTCGAGCAAACTAGGAACACACTTCTTTTTGCTTGTTATGCAAAAGAAGTGACTGTTAAAGCACAGGTAAATGTAGTGATGTCTGATAAGGCCTTGGTCAAGCAGCTGCAGAAAGAAGTGGACAGATTAGAGAGTGAGTTGAGAATTCCCGGTCCTCCTTCCACCAACTGTGATTGTGCAGCAATGTTGAGAAAGAAAAATCTTCAGATAGAAAAGATGGAGAAAGAGATTAGGGAGCTAACCAAGCAACATGATCTTGCTCAATCTCGTGTTGAGGATTTGCTGCGCATGGTTGGAAACAATCAGAAATGTGGACAAGAAAGGGTAGATACCTGGGAAGATGACAATTCTGTGTCAGAGTCATCAAGCATTTATCACCCTCATTTGCGCATTAAAGAATATCATAATCCTCACTATAATGAAGACAGCATAAGTAATCCTGATGAAAACGCTGATGATGAATCCTGCAAAGGAGTTCAATGTGTTGGGTTGGAGGAATCAAGTAGAGATGACCTGGAATACCCTGACCCTTCAGCAAGTTACAATGGAGTGTCAGCATTGCCATTGCTTGAAGTCGAAAATATAATAGACCAGGAACATAGGGAAGGGATACAGAACCAAGACAATTCAACATATAGTGTGCATGATCAAAGACCCCATGATGCACAATTGAGTAATGAATCTCTTGGATGTTCTTACCCTGATGAACAATCTCTACAGGCTATGTCAGCATCAGTGTCAAATTTTAGGAATCTTAAATTAACAAGGAGCTGGAGTTGTAGGGAACATTACACGACAAGTTCTAGTGAGAAAGAAGGAGAAATAGAGAGGACTCCAGCCATTGATTTTGAAAGATGCTTCCCTGGAAGACCAGATGGTTTGCGGAGAAAGTTCCTTCCATTAACTTATGATTCTCCCTCAAAATTGTCTATGAATGGTTCCCCATCTTCAAGGGGAAGTCCTTCTGTGGATGAGTTAAGAACCGACAGTATCAGAACAACTGCAAGTGGGGATATAACTAGCATCCAAACTTTTGTCGCCGGGATGAAGGAAATGGTTAAACTAGAGTATGAGAAGCAGTTTGTTGATGGTCAGGATCAGCAGACAGAGGTAAAAACATATCACAAGAGTATGAAAGATATAGGTGTAGATCCAATGTTAGAGGCAGCTGGGAGTCCTTTAGAGTGGACTCTAAAATTCAAGAAGCAGCAAAAAGAGATAGTTGAACTGTGGCAAACCTGCAGTGTCTCATTGTTCCACAGGACCTACTTCTTTCTTTTGTTCAGGGGTGATCCAACTGACTCTATTTACATGGAGGTGGAACTTAGAAGACTATCTTTCCTCAAAGGAAATCAGACTGAGAAGGGTGGTCAGACAGTCACATTAACTTCAAGTGTGAAGGGTCTTCGTCGGGAGAGAGATGTGCTTGCGAAGCTCATGCAGAAAAGATTAACAGAGGAAGAGAGGAAAAATCTGTTCAAGAAGTGGGGCATTGCATTGGATTCAAAGCGCAGGAGGATGCAACTGGTGAACCGGTTATGGAGCAACACTGATATCGACCACATCACGGAGAGTGCTGCCATTGTCGCAAAGTTAGTCAGGTTTAAAGAGCAAGGTAAGGCCTTGAAGGAGACATTTGGACTTAGCTTCACACCCCAGCACTCACGTCGGATATCACATTCCTGGAAAAGTAGCAGGGTGTCTCTGTTTTAG 2700 0.4244 MGVVAGEGLVKWEKMEGVGGCEEKILVLVRLRPLSEKETVVNEVADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAKNIALSVVNGVNSSIFAYGQTSSGKTYTMIGITEYAVADIFDYINKHEERAFVLKFSAIEIYNEIISDLLSTENTPLRLRDDPEKGPVIEKLTEETLRDWVHLKELLSFCEAQRQVGETYLNEKSSRSHQIIRLTIESSAKEFLGKSNSATLAASVNFVDLAGSERASQALSTGSRLKEGCHINRSLLSLGTVIRKLSKGRQGYINYRDSKLTRILQPSLSGNARTAIICTLSPARSHVEQTRNTLLFACYAKEVTVKAQVNVVMSDKALVKQLQKEVDRLESELRIPGPPSTNCDCAAMLRKKNLQIEKMEKEIRELTKQHDLAQSRVEDLLRMVGNNQKCGQERVDTWEDDNSVSESSSIYHPHLRIKEYHNPHYNEDSISNPDENADDESCKGVQCVGLEESSRDDLEYPDPSASYNGVSALPLLEVENIIDQEHREGIQNQDNSTYSVHDQRPHDAQLSNESLGCSYPDEQSLQAMSASVSNFRNLKLTRSWSCREHYTTSSSEKEGEIERTPAIDFERCFPGRPDGLRRKFLPLTYDSPSKLSMNGSPSSRGSPSVDELRTDSIRTTASGDITSIQTFVAGMKEMVKLEYEKQFVDGQDQQTEVKTYHKSMKDIGVDPMLEAAGSPLEWTLKFKKQQKEIVELWQTCSVSLFHRTYFFLLFRGDPTDSIYMEVELRRLSFLKGNQTEKGGQTVTLTSSVKGLRRERDVLAKLMQKRLTEEERKNLFKKWGIALDSKRRRMQLVNRLWSNTDIDHITESAAIVAKLVRFKEQGKALKETFGLSFTPQHSRRISHSWKSSRVSLF* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2342 899 MobiDBLite consensus disorder prediction 467 486 - -
Lja1g2342 899 Coils Coil 355 375 - -
Lja1g2342 899 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g2342 899 CDD KISc_CENP_E 24 346 - -
Lja1g2342 899 Coils Coil 392 426 - -
Lja1g2342 899 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 MobiDBLite consensus disorder prediction 634 658 - -
Lja1g2342 899 PANTHER CENTROMERE PROTEIN E 7 899 - -
Lja1g2342 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 378 IPR027417 -
Lja1g2342 899 Pfam Domain of unknown function (DUF3490) 728 882 IPR021881 -
Lja1g2342 899 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 PANTHER KINESIN-LIKE PROTEIN KIN-7F 7 899 - -
Lja1g2342 899 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g2342 899 Gene3D Kinesin motor domain 20 377 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2342 Lja-Chr1 27137683 27143328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2342 21 459 Miscellaneous Gene Families AT5G06670 38.022 1.26e-79 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2342 K11498 - gmx:100813479 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2342 1 27137683 27143328 Lja1g2342 1 27137683 27143328 ECH
Lja1g2342 1 27137683 27143328 Lja2g0532 2 4790951 4796974 ECH
Lja1g2342 1 27137683 27143328 Lja4g3159 4 59714849 59722865 ECH