Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3128 ATGCCTTCTTCAATTCAATTTGCTGCGTCTCTGATCTTCCTCTTTCTCTTTCACTTCCTAAAAGGTTCGAATGCAGCCATGTTCACCATTGTGAACAAGTGCAGCTACCCTGTTTGGCCGGGCATTTTATCAGGCGCCGGCACAGAACAGCTGGCCACGACGGGCTTTGCCTTGCAGCCCGGCGAGTCCAACACTTTCACTGTGCCGGCAGCCTGGTCCGGCCGCGTTTGGGGCCGAACCATGTGCTCCACAGACACCGCGGGGAAATTCACATGTGCCACGGGGGACTGCGGCTCCTCCACCATCGAGTGCTCCGGCGGAGGTGCCATCCCGCCGGCAACACTCGCGGAGTTCACCTTGAACGGTGCAGGAGGGCTGGATTTCTACGACGTCAGCCTGGTCGACGGTTACAACCTCCCCACGACGGTGGACCCCGATGGCGCCAGCGTAGGGAACTGCTCGTCGACCGGTTGCATGGTGGATTTGAATGGAGGGTGTCCGGCGGAGCTGAAGGTGAAAATGGAGGAAGAAGGAGGCGGTGGAGGGAAGAGCGTGGCGTGCAAGAGCGCGTGTGAAGCGTTTGGGGATCCGCAATATTGTTGCAGTGGCGATTACGCGAATCCTCAAACATGCAAGCCAAGTTCCTACTCGCAGTTCTTCAAGAGTGCGTGCCCACGCGCTTATAGCTATGCTTATGACGATGGAACTAGCACCTTCACTTGTGCTTCTGCGGATTACATCATCACTTTCTGTCCCTTACCTCCCAAATCCAAAAGTTTGATCAAGTCAGGGAATGGGAAATTTCCAGTGGCAGTGAACATTTGGGTAGGACACGGCCACGTGGATGCAGGGTCAGGCAAAGTCATGGCGGTGGCAATTGGCGCAGTTTTATGGACAATTTCGTGGCAGCTCAATTAG 918 0.5566 MPSSIQFAASLIFLFLFHFLKGSNAAMFTIVNKCSYPVWPGILSGAGTEQLATTGFALQPGESNTFTVPAAWSGRVWGRTMCSTDTAGKFTCATGDCGSSTIECSGGGAIPPATLAEFTLNGAGGLDFYDVSLVDGYNLPTTVDPDGASVGNCSSTGCMVDLNGGCPAELKVKMEEEGGGGGKSVACKSACEAFGDPQYCCSGDYANPQTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYIITFCPLPPKSKSLIKSGNGKFPVAVNIWVGHGHVDAGSGKVMAVAIGAVLWTISWQLN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3128 305 SMART tha2 28 252 IPR001938 -
Lja4g3128 305 Pfam Thaumatin family 32 252 IPR001938 -
Lja4g3128 305 PANTHER OS03G0233200 PROTEIN 18 266 IPR001938 -
Lja4g3128 305 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Lja4g3128 305 CDD TLP-PA 28 251 - -
Lja4g3128 305 PIRSF PR5 1 282 IPR001938 -
Lja4g3128 305 Gene3D Thaumatin 26 252 IPR037176 -
Lja4g3128 305 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Lja4g3128 305 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Lja4g3128 305 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Lja4g3128 305 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Lja4g3128 305 SUPERFAMILY Osmotin, thaumatin-like protein 26 252 IPR037176 -
Lja4g3128 305 PANTHER OS09G0536300 PROTEIN 18 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3128 Lja-Chr4 59273574 59275236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3128 7 252 Receptor kinase-like Gene Family AT5G38280 52.590 1.35e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3128 - - gmx:100809419 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0558 2 5051036 5052981 Lja4g3128 4 59273574 59275236 ECH
Lja1g3495 1 43551382 43555542 Lja4g3128 4 59273574 59275236 ECH
Lja4g3128 4 59273574 59275236 Lja4g3128 4 59273574 59275236 ECH
Lja4g3127 4 59231286 59233477 Lja4g3128 4 59273574 59275236 PCT