Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3495 ATGGATCACCTGACACTATTCTTTTCATTTTTGGTTACTCTTTATCTATCAGTATCATCAGGGGAGGGATCTAGAACATTCACGGTGGTTAACAAATGCGACTACACAGTCTGGCCAGGCATTCTCACTAACGCCGGTGTCACGCCGCTTCCAATCACCGGCTTCGTCTTGCAAACCGGCGAGTCCAAGCTCATACCCGCACCCGCCAATTGGGGAGGCCGATTCTGGGGCCGCACACTCTGCAGTCAGGACTCCGCCGGAAAATTCACCTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAATGCGCCGGCAGCGGAGCAGCACCACCGGCCACACTTGCCGAGTTCACACTTGACGGATCCGACGGCCTCGATTTCTTCGACGTGAGCTTGGTCGACGGCTACAACGTGCCGATGCTGGTTGTTCCGGAGGGTGGATCCGGCAATAACTGCACCGCCACGGGTTGCGTCGGGGATTTGAACGGCGCGTGTCCTTCAGAGCTTAGGGTTACGAGCGTGGATGGGAAACGGAATGTTGCGTGCAAGAGCGCTTGTGAAGCGTTTGGGTCGCCGCAGTACTGTTGCAGCGGCGCGTATGGCTCACCCAACACGTGCAAGCCTTCTACTTACTCTCAAGTGTTCAAGAGCGCGTGTCCACGCGCTTATAGCTACGCGTATGATGATAAGAGCAGTACCTTTACGTGCGCATCTGCTACTGCTTACACCATCACCTTTTGCCCTTCCCCAGATGGTAACCCCAGTAAGAAATCGGGGCAAGAGCAACATCCAAATTTTACCTCACCACCGCAGGTTAGCAGCGGCACAATGGTGTACGTAGGTGCCTTAGATCAAAGTCAAATATCAAGTGCAACAACAGAATCCAATGCTATTGCGGGCATTGTCAGCATAACCATCTCTATTTGGCTCTTGTGTCATCATCACCTCTTCTAA 954 0.5398 MDHLTLFFSFLVTLYLSVSSGEGSRTFTVVNKCDYTVWPGILTNAGVTPLPITGFVLQTGESKLIPAPANWGGRFWGRTLCSQDSAGKFTCVTGDCGSGKLECAGSGAAPPATLAEFTLDGSDGLDFFDVSLVDGYNVPMLVVPEGGSGNNCTATGCVGDLNGACPSELRVTSVDGKRNVACKSACEAFGSPQYCCSGAYGSPNTCKPSTYSQVFKSACPRAYSYAYDDKSSTFTCASATAYTITFCPSPDGNPSKKSGQEQHPNFTSPPQVSSGTMVYVGALDQSQISSATTESNAIAGIVSITISIWLLCHHHLF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3495 317 SMART tha2 27 248 IPR001938 -
Lja1g3495 317 PANTHER OS03G0233200 PROTEIN 4 273 IPR001938 -
Lja1g3495 317 Pfam Thaumatin family 31 248 IPR001938 -
Lja1g3495 317 MobiDBLite consensus disorder prediction 252 272 - -
Lja1g3495 317 CDD TLP-PA 26 247 - -
Lja1g3495 317 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lja1g3495 317 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lja1g3495 317 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lja1g3495 317 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lja1g3495 317 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lja1g3495 317 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Lja1g3495 317 PANTHER BNAA02G17480D PROTEIN 4 273 - -
Lja1g3495 317 PIRSF PR5 1 294 IPR001938 -
Lja1g3495 317 Gene3D Thaumatin 25 248 IPR037176 -
Lja1g3495 317 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3495 Lja-Chr1 43551382 43555542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3495 1 259 Receptor kinase-like Gene Family AT5G38280 52.273 9.27e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3495 - - lja:Lj1g3v2184220.1 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3495 1 43551382 43555542 Lja2g0558 2 5051036 5052981 ECH
Lja1g3495 1 43551382 43555542 Lja4g3128 4 59273574 59275236 ECH
Lja1g3495 1 43551382 43555542 Lja1g3495 1 43551382 43555542 ECH