Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0558 ATGGCAGTTTCAATTCAATTAGCTACCATTTTTGTCACTCTAATTTTGTTTCAATACATAACATATTCATATTCAACAACATTCTCAATAGTCAACAAGTGCAGCTACACAGTCTGGCCCGGAATTCTAACAGGCGCCGGAACAACCCCGCTGTCCAACACCGGCTTCGTTCTTCAGCCCGGCGAGTCCAACACCCTCCCCATGCCACCAAACTGGTCCGGCCGCCTATGGGGCCGGACACTCTGCACTCAAGATACCACCAGGAAATTCTCCTGCGCCACAGGCGACTGCGGCTCCTCCACCTTAGAATGCGTAGGAGGAGGCGCAGCCCCGCCGGCCACTCTCGCCGAGTTCACCTTAAACGGCGCCGGCGGGCTTGATTTCTACGACGTCAGCCTCGTCGACGGTTACAACCTCCCAATGACGGTGGAGCCTCAGGGAGGTACCGGAGGCGGGAACTGCACGTCGACGGGGTGCGTGGTGGACCTGAACGCGGCGTGCCCGACGGAGCTGAAGGTGATGGGCGGCGGAGAAGGCGTCGCGTGCAAGAGCGCGTGTGAAGCGTTTGGAGATCCGCAGTATTGTTGCAGTGGAGCTTACGCGACGCCTGATACGTGTAAACCGAGCTCGTACTCGCAATTCTTCAAGAGCGCGTGCCCACGCGCTTATAGTTACGCGTATGATGATGGCACCAGCACCTTCACCTGCGCTTCTGCTGATTACACCATCACTTTCTGCCCCATACCATCCACAAGTTCAATCAAGTCAGGGAACGGAAAATTCCCAGTGGCGGTGGACACATCTGGAGGGAATGTGGACAGGAGGACAACCACCAGTTTGATGGCGGTGGTAGTTGCCTCTGTTTTGGTGGCGTTTTGGTTACTTAATTAG 891 0.5556 MAVSIQLATIFVTLILFQYITYSYSTTFSIVNKCSYTVWPGILTGAGTTPLSNTGFVLQPGESNTLPMPPNWSGRLWGRTLCTQDTTRKFSCATGDCGSSTLECVGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPMTVEPQGGTGGGNCTSTGCVVDLNAACPTELKVMGGGEGVACKSACEAFGDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYTITFCPIPSTSSIKSGNGKFPVAVDTSGGNVDRRTTTSLMAVVVASVLVAFWLLN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0558 296 PANTHER OS03G0233200 PROTEIN 16 266 IPR001938 -
Lja2g0558 296 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 16 266 - -
Lja2g0558 296 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Lja2g0558 296 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Lja2g0558 296 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Lja2g0558 296 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Lja2g0558 296 Pfam Thaumatin family 32 247 IPR001938 -
Lja2g0558 296 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
Lja2g0558 296 CDD TLP-PA 27 246 - -
Lja2g0558 296 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Lja2g0558 296 PIRSF PR5 1 291 IPR001938 -
Lja2g0558 296 SMART tha2 28 247 IPR001938 -
Lja2g0558 296 Gene3D Thaumatin 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0558 Lja-Chr2 5051036 5052981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0558 1 247 Receptor kinase-like Gene Family AT5G38280 50.996 1.86e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0558 - - gmx:100806478 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0558 2 5051036 5052981 Lja4g3128 4 59273574 59275236 ECH
Lja1g3495 1 43551382 43555542 Lja2g0558 2 5051036 5052981 ECH
Lja2g0558 2 5051036 5052981 Lja2g0558 2 5051036 5052981 ECH