Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3127 ATGTCTCTATTCTCTTATTGCACACATTGCCCTCAAAGATTCATCATTTTCCTACTCATCCTGGCTTTTAAAGGGGTTCGAATTTCAGGGACAACATTCACATTCGTGAACAAATGTGACCACACAGTGTGGCCAGGGATTCTCGGAAAACCGGACCTCGAAACCACCGGCTTCGAGCTGAAACGGGGAAACACGCGCACCATTCCGGCGCCGGCAGGGTGGTCAGGAAGATTCTGGGCCAGAACCGGCTGCAAATTCGACGATTCCGGCCACGGAGCCTGCACCACTGGCGACTGCGGCTCCGGCGAGATAAACTGCAACGGCAACGGCGCAGCACCGCCGGCGACGCTCGCGGAGTTCACCCTGGGACAAACCGGTTCCCAGGACTACTACGACGTGAGCCTCGTCGACGGTTACAATCTCCCGATGGTGGTGGAGGCCAGCGGCGGTTCGGGCTCCTGCGCCGCAACCGGTTGTGGAGCGGATCTTAACCGGCGGTGTCCGGCGGAGTTGAGGGTGGATGGCGGTGACGCGTGCCAGAGTGCTTGCCGCGCGTTTGGGACGCCGGAGTATTGTTGCAGCGGCGCGTTTGGTTCACCTTCGACGTGCGCGCCTTCGGTTTACTCGCAGATGTTCAAGTCTGCGTGTCCAAAATCTTATAGCTATGCGTATGATGATGCTACCAGCACTTTTACTTGTGCTGCAGCTGATTATACAGTCACATTTTGCCCTTCTTCTCCAAGTTTGAAGTCTTTAATGGAATCAGGGCCAGGATCATCAGTTGAGCAGGCTGCAGCAGCTACTTCTTCATGGATAGCCAGTTTGGCCACAGGAGCCTCCAACAGAAGCCAAGCGTTTTCAGTTTCCAACTCTGCATTTTTTGTGGCTCTCACTTTCATTCTTTCCAATTTACTTTCTGAGTGTCCTTAA 930 0.5441 MSLFSYCTHCPQRFIIFLLILAFKGVRISGTTFTFVNKCDHTVWPGILGKPDLETTGFELKRGNTRTIPAPAGWSGRFWARTGCKFDDSGHGACTTGDCGSGEINCNGNGAAPPATLAEFTLGQTGSQDYYDVSLVDGYNLPMVVEASGGSGSCAATGCGADLNRRCPAELRVDGGDACQSACRAFGTPEYCCSGAFGSPSTCAPSVYSQMFKSACPKSYSYAYDDATSTFTCAAADYTVTFCPSSPSLKSLMESGPGSSVEQAAAATSSWIASLATGASNRSQAFSVSNSAFFVALTFILSNLLSECP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3127 309 PANTHER OS03G0233200 PROTEIN 7 268 IPR001938 -
Lja4g3127 309 SUPERFAMILY Osmotin, thaumatin-like protein 31 245 IPR037176 -
Lja4g3127 309 Pfam Thaumatin family 37 244 IPR001938 -
Lja4g3127 309 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Lja4g3127 309 Gene3D Thaumatin 31 244 IPR037176 -
Lja4g3127 309 CDD TLP-PA 32 243 - -
Lja4g3127 309 PIRSF PR5 5 295 IPR001938 -
Lja4g3127 309 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Lja4g3127 309 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Lja4g3127 309 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Lja4g3127 309 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Lja4g3127 309 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Lja4g3127 309 SMART tha2 33 244 IPR001938 -
Lja4g3127 309 ProSiteProfiles Thaumatin family profile. 30 244 IPR001938 -
Lja4g3127 309 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 7 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3127 Lja-Chr4 59231286 59233477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3127 15 280 Receptor kinase-like Gene Family AT5G38280 44.964 1.62e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3127 - - gmx:100808342 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3127 4 59231286 59233477 Lja4g3127 4 59231286 59233477 ECH
Lja2g0559 2 5067689 5069513 Lja4g3127 4 59231286 59233477 ECH
Lja4g3127 4 59231286 59233477 Lja4g3128 4 59273574 59275236 PCT