Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0220 ATGGAGAGCATTCTTAAGCCCTTAAGAGATGGAGAATCAGTGCTGGACCTCAGTCCAAGATCCACCGTCGGCGGTGGTGTTGAGGATGTGTATGGCGAGGATCGTGCCACCGAGGACCAGCTTGTCACCCCTTGGACTTTCTCTGTTGCCAGTGGACACTCTTTGCTAAGGGATCCACAGTATAACAAAGGACTTGCTTTCACTGAGAAAGAGAGGGATGCACACTTTTTGCGTGGCCTTCTGCCTCCCACAGTTAGCACACAGGAACTTCAGGAGAAGAAAACAATGAATGGCATCAGACAATATGAGGTTCCCTTGCAGAAGTATGTGGCCATGATGGACCTTCAGGAGACGAATGAAAGGCTGTTTTACAAACTTCTCATCGACAATGTTGAGGAGTTGCTTCCAATTGTATATACTCCTGTAGTTGGTGAAGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTCTGAAAGAGAAGGGGAGAATCCTTGAGGTTTTGAAAAATTGGCCTGAGAGGAGTATTCAGGTGATTGTCGTAACTGATGGTGAGCGGATTCTGGGACTTGGGGATCTTGGATGCCAGGGGATGGGAATTCCTGTTGGTAAATTGGCTTTGTACAGTGCACTAGGTGGAGTTCGTCCTTCAGCATGTTTACCAGTAACCATTGATGTGGGGACAAACAATGAGCAATTACTGAATGATGAGTTTTACATTGGACTTAGACAAAAGAGGGCAACAGGGAAGGAATATTATGATCTTCTTCATGAGTTCATGACTGCAGTGAAGCAAAACTATGGGGAAAAAGTTCTAGTGCAGTTTGAAGATTTTGCAAATCACAATGCTTTTGAGTTGCTTGCTAAATATGGCACAACTCATCTTGTTTTCAATGACGATATACAGGGAACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCTCTAAAGCTCATTGGCGGTACCCTGGGTGACCACACATTCCTCTTCCTTGGTGCCGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGACTAAGCAACCTATTGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTGATTGTTAGTTCGCGGGCGAATTCTCTTCAACACTTTAAGAAGCCTTGGGCTCATGAACATGAGCCTGTTAGCACTCTCATAGATGCTGTTAAGGTAATCAAGCCTACAGTTTTGATTGGATCATCAGGAGTGGGACAGACATTTACAAAGGAAGTAATAGAGGCTATGACTTCAAACAATGAAAAACCTCTCATTTTGGCTCTTTCCAATCCAACCTCACAGTCTGAGTGTACAGCTCAACAGGCCTACGAATGGAGTGAGGGCCGCGCAATCTTTGCTAGTGGAAGCCCATTTGATCCAGTTGAAATTAAGGGCAAAGTTTATTATTCTGGCCAGTCCAACAATGCTTACATATTCCCAGGCTTTGGTTTGGGTTTGGTAATGTCAGGAGCAATCCGAGTCCATGATGATATGCTTCTAGCAGCATCGGAAGCATTGGCTAAACAAGTTTCAGAGGAGAACTACAAGAAGGGTTTGATTTACCCACCTTTCACTGATATCAGAAAAATTTCGGCTGATATAGCTGCAAGTGTTGCTGCCAAGGCATATGAACTAGGTTTGGCTACACATATTCCTCGTCCTCAGGATCTTGTCAAGTATGCTGAGAGTTGTATGTATAGCCCTGTATACCGCAACTACAGGTGA 1776 0.4465 MESILKPLRDGESVLDLSPRSTVGGGVEDVYGEDRATEDQLVTPWTFSVASGHSLLRDPQYNKGLAFTEKERDAHFLRGLLPPTVSTQELQEKKTMNGIRQYEVPLQKYVAMMDLQETNERLFYKLLIDNVEELLPIVYTPVVGEACQKYGSIFRRPQGLYISLKEKGRILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPVTIDVGTNNEQLLNDEFYIGLRQKRATGKEYYDLLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLGDHTFLFLGAGEAGTGIAELIALEMSKQTKQPIEESRKKIWLVDSKGLIVSSRANSLQHFKKPWAHEHEPVSTLIDAVKVIKPTVLIGSSGVGQTFTKEVIEAMTSNNEKPLILALSNPTSQSECTAQQAYEWSEGRAIFASGSPFDPVEIKGKVYYSGQSNNAYIFPGFGLGLVMSGAIRVHDDMLLAASEALAKQVSEENYKKGLIYPPFTDIRKISADIAASVAAKAYELGLATHIPRPQDLVKYAESCMYSPVYRNYR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0220 591 SMART Malic_M_2 307 560 IPR012302 GO:0051287
Lja4g0220 591 PANTHER MALIC ENZYME-RELATED 18 591 - -
Lja4g0220 591 ProSitePatterns Malic enzymes signature. 303 319 IPR015884 GO:0004471
Lja4g0220 591 PANTHER MALIC ENZYME 18 591 - -
Lja4g0220 591 Pfam Malic enzyme, NAD binding domain 307 559 IPR012302 GO:0051287
Lja4g0220 591 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 306 IPR046346 -
Lja4g0220 591 PIRSF ME 27 591 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 CDD NAD_bind_1_malic_enz 307 585 - -
Lja4g0220 591 Gene3D - 305 591 - -
Lja4g0220 591 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 590 IPR036291 -
Lja4g0220 591 Pfam Malic enzyme, N-terminal domain 116 296 IPR012301 GO:0004471
Lja4g0220 591 SMART malic_2 116 297 IPR012301 GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 182 211 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 334 350 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 303 319 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 278 296 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 218 240 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 437 453 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 PRINTS Malic enzyme signature 122 146 IPR001891 GO:0004470|GO:0004471
Lja4g0220 591 Gene3D - 50 304 IPR037062 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0220 Lja-Chr4 1748554 1754575 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0220 K00029 - gmx:100782096 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0220 4 1748554 1754575 Lja3g2008 3 23264272 23269071 ECH
Lja4g0220 4 1748554 1754575 Lja3g5079 3 93120738 93127321 ECH
Lja4g0220 4 1748554 1754575 Lja1g3680 1 45976978 45982864 ECH
Lja4g0220 4 1748554 1754575 Lja4g0220 4 1748554 1754575 ECH