Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3680 ATGCGCTTCAACTGGCGCAGGCACACCTGTAAATTTCTCGCACCAACCACAAAGAGACTAGTTGGAAGTTGCGGAGAACCAAAGTTGAATATTGCAGCGATGTCGAGGAACGGAGGAGAAGGAGTAGTAGGAGAGGATTTCAAGAACAGTGAAGAGAGTGGTGGTGTTAGGGACTTGTATGGTGAGGATAGTGCCACAGAGGATCAGCTTATCACACCATGGACTTTCTCAGTGGCAAGTGGCAACACTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCTTTCACTGAGAAAGAAAGAGATGCACATTACTTACGTGGCCTTTTGCCTCCAGCTGTATTCACTCAGGAGCTTCAGGAAAAGAGGACGATGCACAATATTCGCCAGTATGAGGTTCCTCTGCATAAGTACATGGCCATGATGGATCTCCAGGAGAGGAATGAAAGGCTGTTTTACAAGATTCTCATTGATAATGTTGAGGAATTGCTTCCCATTGTTTACACTCCAGTGGTTGGAGAAGCCTGCCAGAAATATGGAAGCATTTATAAGCGTCCTCAAGGTCTATACATCAGTTTGAAAGAGAAAGGCAAGATCCTTGAAGTGCTGAAAAACTGGCCAGAAAAGACTATTCAAGTTATTGTTGTGACTGATGGTGAGCGCATATTGGGGCTTGGAGATCTTGGTTGCCAGGGAATGGGGATTCCTGTTGGGAAACTCTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCATCATGCTTGCCTGTTACCATTGATGTTGGCACAAACAATGAGACATTGCTGAATGATGAGTTTTACACTGGTCTTAGACAGAAGCGGGCAACCGGAAAGGAATATGAGGAGCTTCTAGATGAGTTTATGCGTGCAGTCAAGCAGAACTATGGGGAGAAAGTTCTTATACAGTTTGAAGATTTTGCCAATCATAATGCATTCAATCTGCTGGATAGATACAGCTCATCTCATCTTGTTTTTAATGATGATATACAGGGTACAGCTTCTGTGGTATTAGCAGGATTGCTTGCTTCCCTGAAATTAGTTGGGGGAACTTTAGCTGACCATACCTTCTTATTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTTGAAGAGACCCGCAAGAAGGTCTGGCTTGTGGATTCTAAGGGCCTTATTGTTAGATCTCGTTTGGAATCACTTCAACACTTCAAAAAGCCTTGGGCACACGAGCATGAACCTGTAAAGGCGCTTCTTGATGCTGTCAAGGCAATCAAGCCAACCGTATTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAGCCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACTGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATTTTTGCTAGTGGAAGCCCATTTGATCCTGTTAAATATGGAGGAAAAGTTTATGCTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGCTTTGGTTTGGGTTTGATCATCTCTGGGGCAATCCGCGTGCGTGATGAGATGCTCTTGGCAGCTTCTGAAGCTTTGGCTGCACAAGTATCACAGGAGAACTATGACAAGGGACTGATTTACCCTCCTTTCACAAATATCAGAAAGATATCAGCCCATATTGCTGCTAGTGTTGCAGCGAAAGTATACGAACTTGGTCTGGCTTCTCATCTACCTCGACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTATAGAAGCTACCTTTGA 1863 0.4482 MRFNWRRHTCKFLAPTTKRLVGSCGEPKLNIAAMSRNGGEGVVGEDFKNSEESGGVRDLYGEDSATEDQLITPWTFSVASGNTLLRDPRYNKGLAFTEKERDAHYLRGLLPPAVFTQELQEKRTMHNIRQYEVPLHKYMAMMDLQERNERLFYKILIDNVEELLPIVYTPVVGEACQKYGSIYKRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNETLLNDEFYTGLRQKRATGKEYEELLDEFMRAVKQNYGEKVLIQFEDFANHNAFNLLDRYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKVWLVDSKGLIVRSRLESLQHFKKPWAHEHEPVKALLDAVKAIKPTVLIGSSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVKYGGKVYAPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISAHIAASVAAKVYELGLASHLPRPKDLVKYAESCMYSPGYRSYL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3680 620 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 58 335 IPR046346 -
Lja1g3680 620 ProSitePatterns Malic enzymes signature. 332 348 IPR015884 GO:0004471
Lja1g3680 620 Pfam Malic enzyme, NAD binding domain 336 587 IPR012302 GO:0051287
Lja1g3680 620 SMART Malic_M_2 336 589 IPR012302 GO:0051287
Lja1g3680 620 Pfam Malic enzyme, N-terminal domain 145 325 IPR012301 GO:0004471
Lja1g3680 620 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 336 619 IPR036291 -
Lja1g3680 620 Gene3D - 79 333 IPR037062 GO:0004471
Lja1g3680 620 SMART malic_2 145 326 IPR012301 GO:0004471
Lja1g3680 620 Gene3D - 334 620 - -
Lja1g3680 620 PRINTS Malic enzyme signature 211 240 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PRINTS Malic enzyme signature 363 379 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PRINTS Malic enzyme signature 466 482 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PRINTS Malic enzyme signature 332 348 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PRINTS Malic enzyme signature 307 325 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PRINTS Malic enzyme signature 151 175 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PRINTS Malic enzyme signature 247 269 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PIRSF ME 47 620 IPR001891 GO:0004470|GO:0004471
Lja1g3680 620 PANTHER MALIC ENZYME 32 619 - -
Lja1g3680 620 CDD NAD_bind_1_malic_enz 336 614 - -
Lja1g3680 620 PANTHER MALIC ENZYME-RELATED 32 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3680 Lja-Chr1 45976978 45982864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3680 K00029 - gmx:100801564 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3680 1 45976978 45982864 Lja1g3680 1 45976978 45982864 ECH
Lja4g0220 4 1748554 1754575 Lja1g3680 1 45976978 45982864 ECH
Lja3g2008 3 23264272 23269071 Lja1g3680 1 45976978 45982864 ECH
Lja3g5079 3 93120738 93127321 Lja1g3680 1 45976978 45982864 ECH