Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5079 ATGATCTCATCTAGATGCAGCTTCCTGAGCAACTCAGGGTTAGGTGGGTCTAGCAACTTCTCTGGTTCACAGAGAAGGCATTCAGCTCCTTTGAGGGTGCTGTGTATGGCCCCAAGCAGCAGCACCAAGTCAGGTGATAGAAACGGCAGCGTTGTGATGGAGACGCCAACACTGACGCCGTCGAAAGAGAATGACATGAGAAACGGGACCACCGTGGCGGACGTAGACGATAACCCAATCTCCCCCGGCGGTCCTCAGGATGTGTACGGCGAGGATAGGGCCACGGAGGATCACTTTGTGACTCCTTGGAGTGTCTCTGTCTCTAGTGGTTATACATTGTTGCGAGATCCTCACTTCAACAAAGGGCTAGCCTTCTCGGAGAAGGAGAGGGATGCTCACTACTTGCGTGGTCTTCTTCCCCCGACAGTTATTCCTCAGGAAACTCAGGTGAAGAAAATGATCCAGCACATACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAAAGAAATGAACGGCTGTTTTACAAACTCCTTATCGATCACGTGGAAGAGTTACTCCCAGTTGTCTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGCAGCATCTTTATGCGTCCTCAGGGTCTTTATATCAGTTTGAAGGAGAAGGGAAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATAGTGGTAACTGATGGAGAACGGATCCTGGGTCTTGGAGATCTTGGTTGTCAGGGAATGGGAATACCGGTAGGAAAACTCTCCTTATATACTGCTCTTGGAGGAGTTCGTCCTTCTGCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGCTAAATGATGAATTATATATTGGACTAAAGCAAAGACGAGCAACTGGGCAGGAATATGCTGAACTTATGAATGAATTTATGACTGCTGTCAAGCAAACTTATGGTGAAAAAGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCCACACATCTGGTGTTTAATGATGACATTCAGGGAACAGCATCTGTGGTTCTTGCTGGACTAGTTGCAGCTCTGAAATTGGTTGGAGGAAACTTAGCTGACCACAGATTCTTATTCCTTGGTGCCGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATTCCCCACTGGAGGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGACTGATTGTCAGTTCCCGGAAAGAATCACTCCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTCAAAAATCTAGTAGATGCTGTTAAGCAAATCAAGCCAACAGTGCTGATTGGAACATCAGGACAAGGTAGAACTTTTACCAAAGAGGTCATTGAGGCCATGTCCTCTATAAATGAGAGACCTATCATTCTTTCTCTTTCGAACCCAACGTCGCAGTCAGAATGTACTGCTGAAGAAGCTTATACATGGAGCAAGGGACGCGCCATTTTTGCAAGTGGGAGCCCATTTCCCCCAGTTCCGTATGATGATAAAGTGTTTGTGCCTGGCCAGGCCAACAATGCATACATATTCCCTGGATTCGGTCTAGGTTTGATTATGTCTGGGACGATTCGAGTGCATGATGACCTGCTTCTGGCTGCCTCGGAGGCTTTGGCTGAACAAGTGACACAAGAGCACTTTGACAAAGGGCTCATATTTCCACCATTCACCAACATCAGAAAGATTTCAGCACATATAGCTGCCAAAGTTGCTGCTAAGGCTTATGAACTAGGGTTGGCCACTCGCCTTCCACAACCCAAAGATTTGGTGAAGTTTGCTGAGAGCTGCATGTATACCCCAGCCTACAGAACCTACCGGTGA 1950 0.4615 MISSRCSFLSNSGLGGSSNFSGSQRRHSAPLRVLCMAPSSSTKSGDRNGSVVMETPTLTPSKENDMRNGTTVADVDDNPISPGGPQDVYGEDRATEDHFVTPWSVSVSSGYTLLRDPHFNKGLAFSEKERDAHYLRGLLPPTVIPQETQVKKMIQHIRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMNEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNSPLEEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKNLVDAVKQIKPTVLIGTSGQGRTFTKEVIEAMSSINERPIILSLSNPTSQSECTAEEAYTWSKGRAIFASGSPFPPVPYDDKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAEQVTQEHFDKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRTYR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5079 649 PANTHER MALIC ENZYME-RELATED 80 649 - -
Lja3g5079 649 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 89 364 IPR046346 -
Lja3g5079 649 CDD NAD_bind_1_malic_enz 365 643 - -
Lja3g5079 649 MobiDBLite consensus disorder prediction 38 82 - -
Lja3g5079 649 PIRSF ME 70 649 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 MobiDBLite consensus disorder prediction 38 68 - -
Lja3g5079 649 Pfam Malic enzyme, NAD binding domain 365 617 IPR012302 GO:0051287
Lja3g5079 649 Gene3D - 108 362 IPR037062 GO:0004471
Lja3g5079 649 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 80 649 - -
Lja3g5079 649 Pfam Malic enzyme, N-terminal domain 174 355 IPR012301 GO:0004471
Lja3g5079 649 ProSitePatterns Malic enzymes signature. 361 377 IPR015884 GO:0004471
Lja3g5079 649 SMART Malic_M_2 365 618 IPR012302 GO:0051287
Lja3g5079 649 PRINTS Malic enzyme signature 276 298 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 PRINTS Malic enzyme signature 240 269 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 PRINTS Malic enzyme signature 336 354 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 PRINTS Malic enzyme signature 361 377 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 PRINTS Malic enzyme signature 392 408 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 PRINTS Malic enzyme signature 495 511 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 PRINTS Malic enzyme signature 180 204 IPR001891 GO:0004470|GO:0004471
Lja3g5079 649 Gene3D - 363 649 - -
Lja3g5079 649 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 365 648 IPR036291 -
Lja3g5079 649 SMART malic_2 174 355 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5079 Lja-Chr3 93120738 93127321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5079 K00029 - gmx:100791514 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2008 3 23264272 23269071 Lja3g5079 3 93120738 93127321 ECH
Lja4g0220 4 1748554 1754575 Lja3g5079 3 93120738 93127321 ECH
Lja3g5079 3 93120738 93127321 Lja3g5079 3 93120738 93127321 ECH
Lja3g5079 3 93120738 93127321 Lja1g3680 1 45976978 45982864 ECH
Lja3g5079 3 93120738 93127321 Lja3g2008 3 23264272 23269071 PCT