Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2008 ATGATCGATCTAACTTCCTTCTTCCTCTCCTTCAGCTTCTCTGGAGTGCAGAGGAAGCAGCATCGGGGTCCTTCGAGAGTAGCGTGTTCAGCTCTAAGCACAGGTGAAAGACACGGAAGCATTTTGATGGAGATATCGTCGGATGAGACAAGTAACGGTTCTGTGGTGGCCGACGTTGACGATAATGCCATCTCTGGTGGTGGCGTTCAGGACGTGTACGGTGAGGATAGGGCCACTGAGGATCAATTTGTAACTCCTTGGAGTGTCTCTATTGCTAGTGGTTATACTTTGTTGAGAGATCCACACTTCAACAAAGGACTGGCCTTCACTGAAAAAGAGAGGGATGCTCACTATTTGCGTGGCCTTCTTCCCCCAACTGTTTTTTCTCAAGAAACTCAGGTGAAGAAAATGATCCAACAAATACGCCTGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAAAGACTGTTTTACAAGCTTCTAATTGACCATGTTGAGGAGTTACTCCCAGTTGTCTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTCATGAATCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAAGGGAGGATTCTTGAAGTGCTCAGGAATTGGCCTGAGAAGAACATTCAAGTTATTGTTGTAACTGATGGAGAGCGGATCCTGGGTCTTGGGGATCTTGGCTGTCAAGGTATGGGAATACCAGTAGGGAAACTTTCTTTATATACAGCTCTTGGTGGAGTTCGCCCTTCTTCTTGCTTGCCTATTACCATTGATGTCGGTACAAACAACGAGAAGCTATTGAATGACGAATTATATATAGGGCTCAAGCATAGACGAGCAACTGGGCAGGAATATGCTGAACTTCTTCATGAATTTATGACCGCAGTCAAGCAAAATTATGGAGAAAAAATCCTTGTTCAGTTTGAAGATTTTGCGAACCACAATGCTTTTGATCTGCTTGAAAAGTACAGGTCAACTCATCTTGTTTTCAATGATGATATTCAGGGAACCGCTTCAGTGGTCCTTGCAGGACTAGTTGCAGCTCTGAAATTGGTTGGGGGAAGCTTGCCTGACCATAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAGTATCAAAACAGACAAATGCCCCCCTGGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTAATTGTCAGTTCCCGAAAAGAATCCCTCCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTTAAGGAACTTGCCGATGCTATTAATCAAATTAAGCCAACAGTGTTGATTGGAACATCAGGACAAGGGAGAACTTTTACTCAACAAGTGATTGAGGCTATGGCCTCCATTAATGAGAAACCGATTATTCTTTCTCTTTCCAACCCGACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTATACATGGAGCGAGGGACGTGCGATTTTTGCTAGCGGCAGTCCATTTGCCCCAGTTGAATATGATGGAAAAGTTTTTGTGCCTGGCCAGGCCAACAATGCATACATTTTTCCTGGATTTGGTCTCGGGCTAATAATGTCCGGGACCATCCGAGTGCATGACGACCTGCTTCTGGCAGCTTCTGAAGCTTTGGGTTCACAAGTGACCCAAGAGGACTATGACAGGGGACTCATATACCCACCATTCACTAATATCAGAAAAATTTCAGCACACATAGCTGCCAAAGTAGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTCGCCTTCCTCAACCGAAAGATTTGGTGAAATTTGCTGAGAGCTGTATGTATACCCCAGCTTATAGAAACTACCGGTGA 1902 0.4474 MIDLTSFFLSFSFSGVQRKQHRGPSRVACSALSTGERHGSILMEISSDETSNGSVVADVDDNAISGGGVQDVYGEDRATEDQFVTPWSVSIASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVFSQETQVKKMIQQIRLYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMNPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHRRATGQEYAELLHEFMTAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGSLPDHRFLFLGAGEAGTGIAELIALEVSKQTNAPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELADAINQIKPTVLIGTSGQGRTFTQQVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSEGRAIFASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALGSQVTQEDYDRGLIYPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRNYR* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2008 633 Gene3D - 347 633 - -
Lja3g2008 633 CDD NAD_bind_1_malic_enz 349 627 - -
Lja3g2008 633 PRINTS Malic enzyme signature 376 392 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 PRINTS Malic enzyme signature 345 361 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 PRINTS Malic enzyme signature 260 282 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 PRINTS Malic enzyme signature 224 253 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 PRINTS Malic enzyme signature 164 188 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 PRINTS Malic enzyme signature 320 338 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 PRINTS Malic enzyme signature 479 495 IPR001891 GO:0004470|GO:0004471
Lja3g2008 633 SMART malic_2 158 339 IPR012301 GO:0004471
Lja3g2008 633 ProSitePatterns Malic enzymes signature. 345 361 IPR015884 GO:0004471
Lja3g2008 633 Gene3D - 92 346 IPR037062 GO:0004471
Lja3g2008 633 Pfam Malic enzyme, NAD binding domain 349 601 IPR012302 GO:0051287
Lja3g2008 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 349 632 IPR036291 -
Lja3g2008 633 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 64 633 - -
Lja3g2008 633 PANTHER MALIC ENZYME-RELATED 64 633 - -
Lja3g2008 633 Pfam Malic enzyme, N-terminal domain 158 339 IPR012301 GO:0004471
Lja3g2008 633 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 71 348 IPR046346 -
Lja3g2008 633 SMART Malic_M_2 349 602 IPR012302 GO:0051287
Lja3g2008 633 PIRSF ME 58 633 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2008 Lja-Chr3 23264272 23269071 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2008 K00029 - gmx:100800844 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2008 3 23264272 23269071 Lja3g5079 3 93120738 93127321 ECH
Lja4g0220 4 1748554 1754575 Lja3g2008 3 23264272 23269071 ECH
Lja3g2008 3 23264272 23269071 Lja3g2008 3 23264272 23269071 ECH
Lja3g2008 3 23264272 23269071 Lja1g3680 1 45976978 45982864 ECH
Lja3g5079 3 93120738 93127321 Lja3g2008 3 23264272 23269071 PCT