Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3033 ATGGATTCAAGTTCTTTGAACATAGCAATGTATCCATGGCTAGCTCTTGGTCATCAAACTCCCTTTATGCACCTAGCGAACAAGTTAGCCAAAAAAGGCCACAAAATCACCTACTTCATAAATAGAAAGTCACAAGCCAAGTTAGAACCTTTCAATCTCCACCCTAATCTCATCACCTTCGTAACGATCAACATTCCTCATGTCGAAGGCCTTCCTCCTAATGCAGAATCCACCTCAGATGCGGCTTACCATTTAATCCCCCACATCATGACAGCCATGGATCTAACTCAACCTGACATGGAAACTCATCTTAACAACCTCAAACCTGACATTATCTTCTATGATTTCACCCATTGGATGCCAGCTTTGGCGCGGCGTTTCGGTATCAAGGCCGTCCAATATTGTGTTTCTAGTTCATCCTTGGTCGCCTACACTCTTACCCCATCAAGGTATCACCAAGGAGCCAACATAACTGAAATTGACATGATGAAGCCTCCTCCAGGGTACCCTGATTCATCTATGAAGCTTCATTTACATGAAGCGCGAGCCTATGCTGCGAAAAGGAAAGAGATTTTCGGCAGCAATGTTCTTTTCTACGATCGCCAGCAAATCTCGTTGAGTGAAGCCGATGCCTTGGGATACAGAACTTGCAGAGAAATTGAAGGGCCTTATCTTGATTACATAGAAAAGGAGTTCAAGAAACCTGTGCTTGTTACAGGACCAGTAATACTAGAGCTACCCAAGTCTGGTTTGGATGAGAAATGGGTTTCATGGCTTGGAGGGTTCAAACCAGGGTCAGTGGTCTATTGTTGTTTTGGAAGTGAATGCACTATGAAACCAGAGCAATTTATTGAATTGGTGCTTGGTCTTGAGCTCACTGGCTTGCCATTCTTGGCAGCTTTGAGACCCCCAATTGGGTTTGATTCACTTGAAGCAGCACTGCCAGAAGGGTTTGAAACTAGGGTTCAAGGAAGAGGGATTGTGTATGGTGGATGGATTCAGCAGCAATTGATTTTGCAACACCCATCTGTGGGGTGCTTCATCACACATTGTGGATTCGGTTCATTGTCAGAGGCATTGGGGAATGAGTGTCAATTGGTGTTGATACCAAATGTTGGTGACCAGATTGTGGTTGGAAGGATGATGGCTAATAACTTGCAAGTTGGGGTGGAAGTGGAAAAAGGTGAAGAAACTGGGTTTTACACTAAGGACAGTGTCCGCAAAGCTGTGAGCATTGTGATGGATAATGAGAATGAAACCAGCAAAAAAATCAGAGCTAACCATGCCAGGATTAGAGAGATGCTGCTCACCAAAGATTTAGAGTCTTCTTATATTGACAATTTCTGCAAGAAGCTTCAAGAGATTGTTGGGAAAAAGAGCCCATAA 1386 0.438 MDSSSLNIAMYPWLALGHQTPFMHLANKLAKKGHKITYFINRKSQAKLEPFNLHPNLITFVTINIPHVEGLPPNAESTSDAAYHLIPHIMTAMDLTQPDMETHLNNLKPDIIFYDFTHWMPALARRFGIKAVQYCVSSSSLVAYTLTPSRYHQGANITEIDMMKPPPGYPDSSMKLHLHEARAYAAKRKEIFGSNVLFYDRQQISLSEADALGYRTCREIEGPYLDYIEKEFKKPVLVTGPVILELPKSGLDEKWVSWLGGFKPGSVVYCCFGSECTMKPEQFIELVLGLELTGLPFLAALRPPIGFDSLEAALPEGFETRVQGRGIVYGGWIQQQLILQHPSVGCFITHCGFGSLSEALGNECQLVLIPNVGDQIVVGRMMANNLQVGVEVEKGEETGFYTKDSVRKAVSIVMDNENETSKKIRANHARIREMLLTKDLESSYIDNFCKKLQEIVGKKSP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3033 461 Gene3D Glycogen Phosphorylase B; 257 437 - -
Lja3g3033 461 ProSitePatterns UDP-glycosyltransferases signature. 332 375 IPR035595 -
Lja3g3033 461 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 327 417 IPR002213 GO:0008194
Lja3g3033 461 CDD GT1_Gtf-like 6 434 IPR002213 GO:0008194
Lja3g3033 461 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 437 - -
Lja3g3033 461 PANTHER GLYCOSYLTRANSFERASE 2 455 - -
Lja3g3033 461 PANTHER UDP-GLYCOSYLTRANSFERASE 79B30 2 455 - -
Lja3g3033 461 Gene3D Glycogen Phosphorylase B; 2 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3033 Lja-Chr3 56643183 56644568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3033 1 456 Glycosyltransferase AT4G27570 46.104 4.34e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3033 K22794 K12933 gmx:100780270 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3081 3 58363484 58365059 Lja3g3033 3 56643183 56644568 PCT
Lja3g3033 3 56643183 56644568 Lja3g3080 3 58359239 58361017 PCT