Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3082 ATGGATTCAGCTCCTATGCACATAGCAATGTTTCCATGGTTTGCCATGGGTCACCTAACCCCATTTCTGCACCTCTCTAACAAATTAGCACGGAGAGGACACAGAATCTCCTTCTTAATCCCCAAAAGAACACAAGCCAAATTAGAACATCTCAACCTGCACCCACAACTCATTACCTTTGTCCCCATCACTGTTCCTCATGTTGATGGTCTTCCTCATGATGCTGAAACAACTTCAGATGTTCCCTTCTCCTTATTCTCAAATCTTGCCACAGCTTTGGATTTGACAGAGAAGGACATTGAACCTCTCCTGATGGACCTGAAGCCACAAATTGTTTTCTTTGATTTTCAATATTGGCTACCCAACATGGCTAGGAGCCTTGGCATCAAGAGTGTCCAATACTTTATAGTTAATCCAGCAACATCAGCTTACTTTGGAACCCCAAGACCGAGCCAAGGAAGTGAAATTACTGAAGTCGATTGCATGAAACCGCCACTGGGGTTTCCTGATGATCCACCATTAAAGTTTTATGCACATGAAATTCGATTCATAGCTTCCTTCGCGAAAGTGGTATTTGGAAGTGGAATTTTCTTTCCTGATCGCTTTGGCATGGGTACACGTTTCGCAGATTTAATGGCTTTCAAAGGTTGCAGAGAAATTGAGGGGCCTTATGTGGATTATCTTGAATCTGTATATAAGAAGCCTGTTCTGCTTTCAGGGCCTCTTTTACCAGAGCCATCAACCTCTACTTTAGAGGAAAAATGGGTTTCATGGCTTGGGAAATTCAAGGCTGGTTCTGTGGTTTTCTGTGCATATGGAAGTGAAGGTCCATTGCAGCAAAATCAGTTCCAAGAGTTGTTGCTTGGACTTGAGCTATCAGGTTTTCCATTTCTTGCAGCACTTAAGCCACCTACTGGATTTGAATCTATTGAAGAAGCTCTTCCTGAAGGCTTCTTAGAAAGGGTTCATGGAAGAGGGATTGCATATGGAGGTTGGATTCAGCAGCAACTGATTTTAGAGCACCCTTCTGTTGGTTGCTTCATAACACACTGTGGAGGAGCTTCTATAACTGAGGCACTTGTCAACACCTGTCAAATGGTGCTGCTGCCGCGACTTGGTTCTGATCATGTCACGAACGCACGGGTGATGAGTGCGAAGTTAAGGGTTGGGGTTGAAGTGGAGAAAGGTGAAGAAGACGGCTTGTTCACAAAAGAAAGTGTGTGCAAAGCTGTGAAAACTGTGATGGATGATGAGAGTGAGCTCGGAAAAGAAGTGAGAGCAAATCATACCAAATTGAGGAACTTGTTACTGAGCGAAAACTTAGAGTCCTCATGTGTTGATACTTTCTGTCAAAGGCTTCAAAAATTGTTGTAA 1374 0.4338 MDSAPMHIAMFPWFAMGHLTPFLHLSNKLARRGHRISFLIPKRTQAKLEHLNLHPQLITFVPITVPHVDGLPHDAETTSDVPFSLFSNLATALDLTEKDIEPLLMDLKPQIVFFDFQYWLPNMARSLGIKSVQYFIVNPATSAYFGTPRPSQGSEITEVDCMKPPLGFPDDPPLKFYAHEIRFIASFAKVVFGSGIFFPDRFGMGTRFADLMAFKGCREIEGPYVDYLESVYKKPVLLSGPLLPEPSTSTLEEKWVSWLGKFKAGSVVFCAYGSEGPLQQNQFQELLLGLELSGFPFLAALKPPTGFESIEEALPEGFLERVHGRGIAYGGWIQQQLILEHPSVGCFITHCGGASITEALVNTCQMVLLPRLGSDHVTNARVMSAKLRVGVEVEKGEEDGLFTKESVCKAVKTVMDDESELGKEVRANHTKLRNLLLSENLESSCVDTFCQRLQKLL* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3082 457 Gene3D Glycogen Phosphorylase B; 2 257 - -
Lja3g3082 457 PANTHER GLYCOSYLTRANSFERASE 3 455 - -
Lja3g3082 457 PANTHER UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN 3 455 - -
Lja3g3082 457 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 439 - -
Lja3g3082 457 CDD GT1_Gtf-like 6 419 IPR002213 GO:0008194
Lja3g3082 457 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 332 419 IPR002213 GO:0008194
Lja3g3082 457 Gene3D Glycogen Phosphorylase B; 258 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3082 Lja-Chr3 58372949 58374635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3082 7 457 Glycosyltransferase AT5G53990 48.009 9.03e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3082 K22794 K12933 gmx:100808439 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3082 3 58372949 58374635 Lja3g3080 3 58359239 58361017 PCT