Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2019 ATGGAAAACAATACACAAGTACTAGCTAAGAGAGTGTGGAGCATGATACGTGTGGCATTCTACATGTTGAGGAAAGGCGTCACAAAGGGAAAGCTCATGATGGACCTCAACACCATGCTCAAACGCCGCCGCAAGCTCGCCGGCAAAGCCATCACCAACCTCATGTTCCACCACCACAACCACGCCAACTCGGTCTCAAGCCGACAATTCACCGCTGCCAGGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACAACTTCTTCACCCTCGGCCACAGCAACAAGCGCCACCGCCACAACAACTTCTTCACGCGCTCTCACGCGCAGCCCACACTTGACGACGACGCCGTGACTGCTAATGCAGTTAAGGCCGTGCTGGAGATGCTGAACAATGAGGCCGTGGCCGAGGCGATGTCTCCGGCATTACCCGGGTTCGGGCGGAGCCCTATGGTGAGGCAGCTGAGGGTGACTGACTCGCCGTTCCCACTGCAAGACAGTGAGATTGTGGGAGAAAAAGATAGCCAGGTGGACAAGGCAGCTGATGAGTTTATAAAGAGGTTCTACATGGAGTTGAGGCAGCAAGATTGA 588 0.5493 MENNTQVLAKRVWSMIRVAFYMLRKGVTKGKLMMDLNTMLKRRRKLAGKAITNLMFHHHNHANSVSSRQFTAAREYEFSCSNTPNNFFTLGHSNKRHRHNNFFTRSHAQPTLDDDAVTANAVKAVLEMLNNEAVAEAMSPALPGFGRSPMVRQLRVTDSPFPLQDSEIVGEKDSQVDKAADEFIKRFYMELRQQD* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2019 195 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 194 - -
Lja3g2019 195 Pfam Cotton fibre expressed protein 174 194 IPR008480 -
Lja3g2019 195 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2019 Lja-Chr3 23518958 23519881 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2019 - - gmx:100801941 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2019 3 23518958 23519881 Lja3g5083 3 93178789 93179611 ECH
Lja4g0219 4 1740304 1741729 Lja3g2019 3 23518958 23519881 ECH
Lja2g1967 2 20714272 20715368 Lja3g2019 3 23518958 23519881 ECH
Lja3g2019 3 23518958 23519881 Lja3g2019 3 23518958 23519881 ECH
Lja3g5085 3 93213178 93214065 Lja3g2019 3 23518958 23519881 PCT