Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0219 ATGGAAATTGAGGGAAGCCAACCGGTAGTAGCAAAGAAGCTATGGAACATGGTACGTGTCCTGTTCTTCATGTTGAGAAAAGGCATAGCCAAGAGCAGAGTAATGGTAGACTTCCACCATTTGATGCTCAAACGTGGAAAGCTCGCCGGAAAAGCCATAGCCAACACCCTCATGTTCCACCACCAATACGCCGCCCTCACTTGCCGCTCCCACAACACCCACCTCTCTGTTTTCTCTCCCCGCGAGTACGAGTTCAGCTGCAGCAACAGCCCTGTTTTTCAACCCACCAAACGCCGCCGCCACCACCATCACCACCGCTACTCTAAGCCTTCTTCACAATATGACGACTTTTCTACTTACAGTGCTGTTCAGAAGGTGCTTGAGATGTTGAACAATGACAAGGTGGAGGTTGATTCTTCTTCCCCTTTGGTGACATTGCCAGGTTTTGGGAAGAGCCCTGTTTGTAGACAACTGAGAGTTACTGATTCACCTTTCCCTCTTAAGGATGAATCAGGGGATAGCCAAGTTGACATGGAAGCAGAGGAGTTCATTAAGAGGTTCTATAAGGACCTCAACTTGCAAAAAAGATCAATGGCTTCTTTTGAGTCACCAAGCTCATGGGTAGATTAA 630 0.4778 MEIEGSQPVVAKKLWNMVRVLFFMLRKGIAKSRVMVDFHHLMLKRGKLAGKAIANTLMFHHQYAALTCRSHNTHLSVFSPREYEFSCSNSPVFQPTKRRRHHHHHRYSKPSSQYDDFSTYSAVQKVLEMLNNDKVEVDSSSPLVTLPGFGKSPVCRQLRVTDSPFPLKDESGDSQVDMEAEEFIKRFYKDLNLQKRSMASFESPSSWVD* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0219 209 Pfam Cotton fibre expressed protein 174 196 IPR008480 -
Lja4g0219 209 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 3 205 - -
Lja4g0219 209 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 3 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0219 Lja-Chr4 1740304 1741729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0219 - - qlo:115977914 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0219 4 1740304 1741729 Lja3g2019 3 23518958 23519881 ECH
Lja4g0219 4 1740304 1741729 Lja3g5083 3 93178789 93179611 ECH
Lja4g0219 4 1740304 1741729 Lja4g0219 4 1740304 1741729 ECH
Lja4g0219 4 1740304 1741729 Lja2g1967 2 20714272 20715368 PCT