Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5083 ATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTACGTGTGGTTTACTTCATGTTGAGAAAAGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGCCGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACACCCTCAATTCTCTGCCTCCAGGGAGTATGAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGCGCAACCGCCACAGCAACCATCACAACAACCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTGACTGCAAACGCCGTGAAGGCGGTGCTGGAGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCGGGGAAGGTGAGGCAGTTGAGGGTGACAGACTCGCCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTATAAGGATTTGAGGAAGCAAGATTGA 585 0.5333 MEMESNAPAVAKRVWSMVRVVYFMLRKGILKGKLMMDLKNIMLRRRGKLAGKAIANLMFHHNHGGATTTSHPQFSASREYEFSCSNTPNYNFFSTGKRNRHSNHHNNHFFTSAHVPPRQDDEAVTANAVKAVLEMLNSDTEVFYSPALPGKVRQLRVTDSPFPLREAEDEKDNQVDKAAEEFIKRFYKDLRKQD* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5083 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 3 193 - -
Lja3g5083 194 Pfam Cotton fibre expressed protein 172 193 IPR008480 -
Lja3g5083 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 3 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5083 Lja-Chr3 93178789 93179611 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5083 - - lja:Lj3g3v0275690.1 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2019 3 23518958 23519881 Lja3g5083 3 93178789 93179611 ECH
Lja4g0219 4 1740304 1741729 Lja3g5083 3 93178789 93179611 ECH
Lja2g1967 2 20714272 20715368 Lja3g5083 3 93178789 93179611 ECH
Lja3g5083 3 93178789 93179611 Lja3g5083 3 93178789 93179611 ECH