Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5085 ATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTACGTGTGGTTTACTTCATGTTGAGAAAAGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGCCGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACCTCATGTTCCACCACAGCCACCACGGCGGCACCACTACCTCCCGCCCTCAATTCTCTGCCTCCAGGGAGTATGAGTTCAGCTGCAGCAACACCCCCAACTACAGCTCCTTCTCCACAGGGAAGCGCAACCGCCACAGCAACCACCACAACAACCACTTCTTCACAAGCGCTCACGCGCCGCCCATGCAGGACGACGAGGCAGTGACAGCGAACGCCGTGAAGGCGGTGCTGGAGATGCTGAATAACGAAACAGAGGTGTTTTATTCCCCTGCTCTTCCCGGGAAGGTGAGGCAGTTGAGGGTGACGGACTCGCCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTATAAGGATTTGAAGAAGCAAGATTGA 585 0.535 MEMESNAPAVAKRVWSMVRVVYFMLRKGILKGKLMMDLKNIMLRRRGKLAGKAIANLMFHHSHHGGTTTSRPQFSASREYEFSCSNTPNYSSFSTGKRNRHSNHHNNHFFTSAHAPPMQDDEAVTANAVKAVLEMLNNETEVFYSPALPGKVRQLRVTDSPFPLREAEDEKDNQVDKAAEEFIKRFYKDLKKQD* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5085 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 3 193 - -
Lja3g5085 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 3 193 - -
Lja3g5085 194 Pfam Cotton fibre expressed protein 172 193 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5085 Lja-Chr3 93213178 93214065 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5085 - - lja:Lj3g3v0275690.1 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5085 3 93213178 93214065 Lja3g2019 3 23518958 23519881 PCT