Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1765 ATGTCGTCTGCCGGTGTTCGCACTCTTAGCCCTGTCCCAAGGGAATCCTTGTTGTCTCCAGTTGGGTTCTGTACCCCACTGCACTTGTCGTTGGACCACGAGTTCATTTTCGTGTATCTGTCTTACTCGGGGTCGTTGACGCCAATGCGGGTTTTACCCTCGGATACCATTGAGTCGGTAAAACTCAAAATTCAAAGGACTGAGAGGCTTCCTTCGTTGACCAACAAGCCGAAGTTGGTTTGTGATGGCCGGGAGCTAGCGCGGAGCAATTCTCTACTCAAAGACTATGGGGTTACAGAAGGTAATGTTTTGCATTTGGTAATACGACTGTCAGATCTTCAGACCATCAGTGTGAGAACTTCTTGTGGGAAGGAATTTACCTTTCAGGTGGAAAGATGCAGGGATGTTGGGTATGTTAAGCAACAGATTGCGAAAAAGGAGCAACAGTTTGCTGATCCTGAACTGCAGGAAGTTATGTGTAATGGAGAGCAGCTTGAGGATCAGAGGCTTATTGATGATATCTGCAGCAAATATAATGATGCAGTGATCCATCTTTTTGTTAGAACAAAATATGCTGAAGTTAAGACAGGAGTAGATGAGTTGTCCATTGCCGCAGCTGAGTTGAACGAGACTAAAAGCTATGATGTTAGTAAAGATACAATGAGGGAGTATGAAGCCACCAAGCACTTCATGCCAAAAAAGGTTATTGGCAGAGATCTTCTTTTGGAGCCTATTATTGTTAACCCTAAAATTGAATTAGATTCAGGGATTTGGAACATGATAAACTCTACATATGATGGGCTAGATAATGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGAGGGGCTTACATTATGCTAGATTCAACAGGGCAAAAGTATGTATCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGTCAATAACCCTAGAGGTTTGCCTTTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACCAGAGTTGGTCAAGGAGCTTTCAGGGAAGTTGCAGCTTATGTTTTGGACCATCCAATGAGTGGCCGCCGATCATTATTTGGTGATGAAAAGGGCTTTGCTGGGGTTCCCCCTACTGTTATGGCTAAGTCCTTGCATAAAGGATTCAACCATCCAGGGGACTTGACTGCTAAGATTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGCGAGGATATGGGGCCTGGAGCTTTCCCAATTAAGGAAGTGCATAAAATTTCTGTGCTGGACATGAGACTGGCAAATGCAGATAGGCATGCAGGGAATATTTTAATCAGCAAAGAGGAGGAAAATGGCCAGACTACTTTGATTCCGATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACATTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCCCCAGAGATCATTGAGTATGTGAAGTCACTGGACGCTGAAGAAGATATTGCCATTTTGAAGTTCCATGGATGGGACCTGCCAGTTGAATGTGCCCGCACTCTTCGAATCTCAACCATGCTGCTGAAGAAAGGAGTGGAGAGAGGGATGACCCCTTTTGCCATTGGAAGCCTTCTGTGCAGAGAATCCTTGAACAAGGAGTCCGCGATTGAAGGAATTGTAAAAGAAGCGCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTTCTGGATGCTGTCTCCGACATCATGGACCAGCATCTTGATGAGATCACCTGTTCCAATTCTTAA 1758 0.4437 MSSAGVRTLSPVPRESLLSPVGFCTPLHLSLDHEFIFVYLSYSGSLTPMRVLPSDTIESVKLKIQRTERLPSLTNKPKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSCGKEFTFQVERCRDVGYVKQQIAKKEQQFADPELQEVMCNGEQLEDQRLIDDICSKYNDAVIHLFVRTKYAEVKTGVDELSIAAAELNETKSYDVSKDTMREYEATKHFMPKKVIGRDLLLEPIIVNPKIELDSGIWNMINSTYDGLDNGNYPIRSAEGTGGAYIMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPMSGRRSLFGDEKGFAGVPPTVMAKSLHKGFNHPGDLTAKIGSLQMFMENNGSCEDMGPGAFPIKEVHKISVLDMRLANADRHAGNILISKEEENGQTTLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIEYVKSLDAEEDIAILKFHGWDLPVECARTLRISTMLLKKGVERGMTPFAIGSLLCRESLNKESAIEGIVKEALDSVLPGTSEATFLDAVSDIMDQHLDEITCSNS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1765 585 CDD Ubl_ubiquitin_like 116 186 - -
Lja3g1765 585 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Lja3g1765 585 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Lja3g1765 585 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 583 IPR044571 -
Lja3g1765 585 SUPERFAMILY Ubiquitin-like 31 110 IPR029071 -
Lja3g1765 585 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 271 564 IPR000403 -
Lja3g1765 585 Pfam Phosphatidylinositol 3- and 4-kinase 280 529 IPR000403 -
Lja3g1765 585 Gene3D - 114 191 - -
Lja3g1765 585 SUPERFAMILY Ubiquitin-like 108 189 IPR029071 -
Lja3g1765 585 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 583 - -
Lja3g1765 585 SUPERFAMILY Protein kinase-like (PK-like) 415 581 IPR011009 -
Lja3g1765 585 SMART ubq_7 114 188 IPR000626 GO:0005515
Lja3g1765 585 SMART ubq_7 36 109 IPR000626 GO:0005515
Lja3g1765 585 Gene3D - 36 112 - -
Lja3g1765 585 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Lja3g1765 585 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1765 Lja-Chr3 19829818 19832935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1765 1 579 Acyl Lipid Metabolism Gene Families AT5G24240 54.514 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1765 - - gmx:100815111 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1765 3 19829818 19832935 Lja1g4840 1 65960802 65964275 ECH
Lja3g1765 3 19829818 19832935 Lja3g1765 3 19829818 19832935 ECH
Lja3g1765 3 19829818 19832935 Lja1g0087 1 735377 738453 ECH
Lja4g0327 4 2648964 2652336 Lja3g1765 3 19829818 19832935 ECH
Lja1g0087 1 735377 738453 Lja3g1765 3 19829818 19832935 PCT