Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0087 ATGTCGTCCGCGGGTGTAACCACTCTTTGTCCTCTTGCCATTGAGCCATTGTTGTCTCCAAAGGCATATCCATTCCCATCACATTTGTCTTTGGAGGATCATTCCATTTTCATATATTTGTCATATTCGGGCTCGATGACGCCGATACGTGTTATGGAGTGGGATACCATTGAGTCTGTAAAATTTAAAATCCAAAGGTGTGATAGCATTCCATTCTTGACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTGGCGCGGAGTGATACTCTGCTCAAGGACTATGGAGTAACAGATGGGAATGTTTTGCATTTGATAATCAAATTGTCAGATCTTCAGGTCATCAATGTGAAGACTTCTAGTGGGAAGGAATTCACGTTTCAGGTCGAACGGGGTAAGGATGTCGGGTACGTGAAGCAACGGATTGCCAATAGGGAGAAACAATTTGATGATCCAGAGGAGCAGGAAATCGAATGTGATGGGGAACAGCTTGAGGACCAGTTGCTTATCAATGATATCCGCTGCAACCATAATGATGCGGTGCTACATCTGTTTGTTAGAAAGAAGCATGCGAAAGTTCAGAGAAGACCCCTTGAGTTGTCCATTGTAGCAACGAATTTGTCTGATAAGAACAAAAATGATGTTGATGGATATGCTTATGAAGTTGGTAAAGAAGATGCTATTAGGAAGTCTGATGCAATTCAAAGGGCTCTGCCAAGAAAGCCTCCTGATAGAGATTTCATTTTGGAGCCTATTATTGTTAACCCTAAAGTTGAATTTGCTTCCGTGATTTTGAATATGGTAAAGTCTTCATATGATGGACTAGATAGCGGAAAATATCCTATCAGGTCCGCAGAGGGTACAGGGGGAGCTTACTTTATGCTAGATTCAACCGGGCAAAAGTATGTTTCTGTTTTTAAACCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCTTTTTCATTAGATGGTGAAGGGTTGAAGAAGGGTACAATAGTTGGACAAGGAGCATTCAGGGAAGTTGCTGCTTATGTTTTGGATCATCCAATTAGTGGGCGCCGCACGTTATTTGGTGATGAGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAAGGGTTTAACCATTCAGGAGACTTGGCTGCTAAGATTGGCTCCATGCAGATGTTCGTGGACAATAATGGAAGCTGTGAAGATATGGGCCCTGGGGCTTTTCCAGTAAAGGAAGTTCATAAAATTACTGTATTGGACATAAGACTAGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCAGCACAGAGGAGGACAAGGACCAATCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGCTTTGAAGATTGCACCTTTGAATGGCTTTACTGGCCCCAAGCTCGGCAGCCGTACTCCCCTGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATCTCCCTTTTGAAATTTCATGGTTGGGATCTGCCAGTTGAATGTGCTCGTATTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCTTATGCCATTGGAAGCCTCATGTGCCGAGAATCCTTGAACAAGGAATCTGTGATAGAGGAAATAGTTCAAGCAGCGCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCGACATTGCTGGATGCTGTTTCCCAAATCATAGACCAGCGCCTTGATGAGATTGCCGGCTCTCTTTTACAACTAGAATTGAATTCTGCAAAAATAGAAGGTATATGA 1818 0.4312 MSSAGVTTLCPLAIEPLLSPKAYPFPSHLSLEDHSIFIYLSYSGSMTPIRVMEWDTIESVKFKIQRCDSIPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQVINVKTSSGKEFTFQVERGKDVGYVKQRIANREKQFDDPEEQEIECDGEQLEDQLLINDIRCNHNDAVLHLFVRKKHAKVQRRPLELSIVATNLSDKNKNDVDGYAYEVGKEDAIRKSDAIQRALPRKPPDRDFILEPIIVNPKVEFASVILNMVKSSYDGLDSGKYPIRSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPFSLDGEGLKKGTIVGQGAFREVAAYVLDHPISGRRTLFGDEKGFAGVPPTLMVKCLHKGFNHSGDLAAKIGSMQMFVDNNGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILLSTEEDKDQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETIDYIKSLDAEEDISLLKFHGWDLPVECARILRISTMLLKKGVERGLTPYAIGSLMCRESLNKESVIEEIVQAALDSVLPGTSEATLLDAVSQIIDQRLDEIAGSLLQLELNSAKIEGI* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0087 605 SUPERFAMILY Ubiquitin-like 32 110 IPR029071 -
Lja1g0087 605 CDD Ubl_ubiquitin_like 116 186 - -
Lja1g0087 605 SMART ubq_7 36 109 IPR000626 GO:0005515
Lja1g0087 605 SMART ubq_7 114 188 IPR000626 GO:0005515
Lja1g0087 605 SUPERFAMILY Ubiquitin-like 109 191 IPR029071 -
Lja1g0087 605 Pfam Phosphatidylinositol 3- and 4-kinase 288 537 IPR000403 -
Lja1g0087 605 Gene3D - 30 113 - -
Lja1g0087 605 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 279 572 IPR000403 -
Lja1g0087 605 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Lja1g0087 605 SUPERFAMILY Protein kinase-like (PK-like) 429 590 IPR011009 -
Lja1g0087 605 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 592 - -
Lja1g0087 605 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 592 IPR044571 -
Lja1g0087 605 Gene3D - 114 197 - -
Lja1g0087 605 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Lja1g0087 605 Pfam Ubiquitin family 43 110 IPR000626 GO:0005515
Lja1g0087 605 ProSiteProfiles Ubiquitin domain profile. 116 182 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0087 Lja-Chr1 735377 738453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0087 33 589 Acyl Lipid Metabolism Gene Families AT5G24240 55.160 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0087 - - lja:Lj1g3v5034840.1 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0087 1 735377 738453 Lja1g4840 1 65960802 65964275 ECH
Lja1g0087 1 735377 738453 Lja1g0087 1 735377 738453 ECH
Lja3g1765 3 19829818 19832935 Lja1g0087 1 735377 738453 ECH
Lja4g0327 4 2648964 2652336 Lja1g0087 1 735377 738453 ECH
Lja1g0087 1 735377 738453 Lja3g1765 3 19829818 19832935 PCT