Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0327 ATGTCAGTTGCTGATTATGCTTTGAGTTCGGTTTGCAAAGAGACGGTGTGTTGGGAAGGTCAATCAGGGCATTGCTCTGATGAGCCAATCCTGATTTACCTTACTGTGGGGGGTGCTGTGACACCAATGCGTGTGTTGGAGTCTGATTCCATTGCCTCTGTGAAACTGAGGATTCAGCAATGCAAAGGCTTTGTGGTGAAGAAGCAGAAGCTGGTTTTTAGTGGCAGAGAGCTTGCTCGCAATGGAACACTCATTAAAGACTATGGTGTCACTGATGGGAATGTTCTTCATCTGGTTCTCCGGCTCTCGGATCTTTTGTCCATCGTTGTGAGGACCGTTTGCGGTAAGGAATTTGAGTTTCACATTGATCGGCATAGAAATGTGGGGTATCTTAAGCAGCGTATTCGAAAAAAAGGGGAAGGTTTTATTGATCTTGAGGATCAAGAGCTTTTCTGCAATGATGAGAAGCTTGATGACCAGAGTCTCTTCCATGACATTTGCAAGGGTGATGATGGTGTGATTCATTTGATTATTAGAAAATCAGCTAAGGTTAGGACCACACCCATTCACAGGGATTTGAAGCTTTCGGTTGAGGCACCTTGCATACCAGGTGAGAGTGAGAGCACTGATCAAAGAGTGAAACTGGGAGAGAATAGGACCAAACAAATTAAAATAGTTTCAAAGATAGTGATTCCACCTGGTGTAGGTTTCTGGTTGGAACCAATTTTAGTGAATCCCAAGATCAATTTTTTTCCTTTCCTTAGGGACATGATCAACTCCACATATGAGGGTTTGAAGAGAGGAAATCGTCCTATTAGGTCCTCGGAAGGCACAGGAGGGACTTACTTCATGCAGGATTCAACAGGTCAGGAGCATGTTTCAGTTTTTAAGCCCATGGATGAGGAACCAATGGCTGTGAACAACCCGCGAGGCTTGCCAAGTTCAGCTGATGGCGAAGGTTTGAAAAGAGGCACAAGGGTGGGAGAAGGAGCTTTGAGGGAAGTTGCAGCTTATGTGTTAGATCATCCAAGGAATGGGCCACGTTTGGTCTCGGGTGAAGAAATGGGGTTTTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTGCACCAAGAGTTTTACCACCCAAATGGTTCATCAAAACATGTCAAGATAGGGTCATTGCAGAAGTTCATGAATAATGATGGCAACTGCGAGGACATTGGACCCGGGGCCTTTCCAGTGGAGGAGGTGCATAAGATTACTGTGCTTGATATAAGAATGGCTAATGCTGACAGACATTCTGGAAATATATTGATTAGAAAGGAAGCAGATGGCAATATTAAGCTCATTCCTATTGATCATGGCTATTGTCTCCCTACTAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCACAAGCACGTGAGCCTTACTCTCCTGAGACGGTTGATTACATCAATTCTCTGGATGCTGAAAAAGACATAGAACTCTTGAAATACTATGGATGGGATATTCCACTTCAGTGTGCACGAACACTCCGTGTTTCCACAATGTTGCTGAAGAAAGGGGTGGCGAGAGGTCTCAGTCCTTATGCAATTGGAACCATCATGTGCCGCGAAAATTTGAACAAGGAATCTGAAATTGAGGAGATCATTAGTGAAGCTCAAGATTCCTTGCTTCCTGGCATGGAGGAATCAGCATTTCTTGAATCCATCTCCCAAATCATGGATTCACACCTTGATAAGCTTGCAAAATAG 1743 0.4418 MSVADYALSSVCKETVCWEGQSGHCSDEPILIYLTVGGAVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFSGRELARNGTLIKDYGVTDGNVLHLVLRLSDLLSIVVRTVCGKEFEFHIDRHRNVGYLKQRIRKKGEGFIDLEDQELFCNDEKLDDQSLFHDICKGDDGVIHLIIRKSAKVRTTPIHRDLKLSVEAPCIPGESESTDQRVKLGENRTKQIKIVSKIVIPPGVGFWLEPILVNPKINFFPFLRDMINSTYEGLKRGNRPIRSSEGTGGTYFMQDSTGQEHVSVFKPMDEEPMAVNNPRGLPSSADGEGLKRGTRVGEGALREVAAYVLDHPRNGPRLVSGEEMGFSGVPPTVMVQCLHQEFYHPNGSSKHVKIGSLQKFMNNDGNCEDIGPGAFPVEEVHKITVLDIRMANADRHSGNILIRKEADGNIKLIPIDHGYCLPTKFEDCTFDWLYWPQAREPYSPETVDYINSLDAEKDIELLKYYGWDIPLQCARTLRVSTMLLKKGVARGLSPYAIGTIMCRENLNKESEIEEIISEAQDSLLPGMEESAFLESISQIMDSHLDKLAK* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0327 580 Pfam Phosphatidylinositol 3- and 4-kinase 277 526 IPR000403 -
Lja4g0327 580 Pfam Ubiquitin family 38 102 IPR000626 GO:0005515
Lja4g0327 580 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 268 562 IPR000403 -
Lja4g0327 580 SUPERFAMILY Ubiquitin-like 33 103 IPR029071 -
Lja4g0327 580 SMART ubq_7 30 101 IPR000626 GO:0005515
Lja4g0327 580 SMART ubq_7 106 179 IPR000626 GO:0005515
Lja4g0327 580 MobiDBLite consensus disorder prediction 302 323 - -
Lja4g0327 580 CDD Ubl_ubiquitin_like 108 177 - -
Lja4g0327 580 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 579 - -
Lja4g0327 580 Gene3D - 106 193 - -
Lja4g0327 580 SUPERFAMILY Protein kinase-like (PK-like) 421 578 IPR011009 -
Lja4g0327 580 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Lja4g0327 580 ProSiteProfiles Ubiquitin domain profile. 106 183 IPR000626 GO:0005515
Lja4g0327 580 Gene3D - 34 104 - -
Lja4g0327 580 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 579 IPR044571 -
Lja4g0327 580 SUPERFAMILY Ubiquitin-like 102 180 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0327 Lja-Chr4 2648964 2652336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0327 1 579 Acyl Lipid Metabolism Gene Families AT5G24240 55.973 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0327 - - gmx:100809172 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0327 4 2648964 2652336 Lja4g0327 4 2648964 2652336 ECH
Lja4g0327 4 2648964 2652336 Lja3g1765 3 19829818 19832935 ECH
Lja4g0327 4 2648964 2652336 Lja1g0087 1 735377 738453 ECH