Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4840 ATGGCTTGTTTGGCGCTTCGTCCGATGCACGAAGAAGCTTTTGGTGATTTTACCAGCTGTTTTAGTCATCATTTGCGGGACTCGATTTTGATTTACCTGACTGTTGGTGGATCCGTGGTTCCGATGCATATTATGGAGACGGATTCGATAGCTTCGATGAAGCTGAGAATTCAAACGTTTAAAGGATTTTTTGTGAGGAAACAGAAGCTGGTTTTTGAAGGGAAGGAATTGGCTCGTGACAAATTGTGCGTCCGTGATTATGGTGTTTCGGATGGGAATGTGTTGCACCTGGTGCTTAGGCTTTCTGATCTTCAAGCTATTACTGTTAGGACTGAATGTGGAAAGGAGTTTGGGTTTTATGTCGGGAAGAAAAGGAATGTGGGTTATGTAAAGCAGCAGATTGCGAGGAAAGGGCAAGGGTTGTTGGATCTTGCAGATCAAGAATTGGTGTGGGAGGGTGAGGCGCTTGAAGACCAGAGACTTATAGAGGACATCTGTAAGGACAACGATGCAGTAATTCACTTTTTGGTTAGGACATCAGATGCCAAAGTTACGACTAAACCAGTTGGGAAGGATTTTGAGTTATCAATTGAGGCATACACTGTGCCAAGTTTTAGTGCAGGCCAGTTAGGGTCAGTGTCAGTAACAAATAGGGCCCTGAAGAGGAATGAATTGACTAGAGAATTTCTTTTGGAACCAATTGTTGTGAATCCCAAGATCAAAATTCCACAAGTGATCCAGGAGCTAATTAAGATTACTTCAGAGGGGTTAGAAAAAGGTGGTAAACCAATTCAATCATCAGAGGGATCTGGAGGGGCTTATCTCATGCAAGATTCACTCGGCTTGAAGTATGTTTCTGTTTTCAAGCCTATTGATGAGGAGCCGATGGCAATCAATAATCCTCGAGGCCTACCTCTCTCTGTGGATGGTGAAGGGGGGTTAAAGAAAGGTACACGAGTAGGGCAAGGTGCGTTGAGAGAAGTTGCAGCTTACATTTTGGATCATCCTAAGAAAGGACCCCGCTCATATCATAACAGTGATGAAAAGGGGTTTGCTGGAGTTCCTCCTACAGTCATGGTCAAATGCTTGCATAAAGGATTCCATCATCCTGAAGGTTACAATAGTGCTTCAGATAATGTTAAATTAGGATCACTTCAGATGTTTATGAAGAATATTGGAAGTTGTGAAGACATGGGCCCTAGTGTATTTCCGGTGGAAGAGGTACACAAGATCTCTGTGCTGGATATCAGGTTGGCAAATGCAGATAGGCATGCTGGGAACATTTTAGTTGCCAAGGATGGTGAAAATGGCTCAACTGTGCTTATTCCAATTGATCATGGCTATTGCTTACCTGAGAGTTTTGAAGACTGCACTTTTGACTGGTTGTATTGGCCACAAGCCAAAGAGCCCTACTCCCCAGATACCATTGAGTACATAAAATCTCTGGATGCTGAAGAAGATATCAAGCTTTTGAAGTTTCATGGATGGGAGCTTCCTCCTGAATGCGCCCGACTCCTTCGAATATCAACCATGCTTCTGAAGAAGGGTGCAGAGAAAGGACTCCCTCCTTTCACCATTGGGAGCATCATGTGTAGAGAAACACTGAAGAAAAAATCTGTCATTGAGCAAATTATTGAGGAAGCTGAGGAAGGTGCACTTCCTGGAACAAGCGAAGCTTCTTTTCTCGATCTTGTTTCAGTGATAATGGATAGCCATTTAGAAGAGCCATTCCCATGA 1737 0.4347 MACLALRPMHEEAFGDFTSCFSHHLRDSILIYLTVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHFLVRTSDAKVTTKPVGKDFELSIEAYTVPSFSAGQLGSVSVTNRALKRNELTREFLLEPIVVNPKIKIPQVIQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAINNPRGLPLSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHKGFHHPEGYNSASDNVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLANADRHAGNILVAKDGENGSTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTIEYIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRETLKKKSVIEQIIEEAEEGALPGTSEASFLDLVSVIMDSHLEEPFP* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4840 578 ProSiteProfiles Ubiquitin domain profile. 105 182 IPR000626 GO:0005515
Lja1g4840 578 Pfam Ubiquitin family 107 179 IPR000626 GO:0005515
Lja1g4840 578 Pfam Ubiquitin family 35 101 IPR000626 GO:0005515
Lja1g4840 578 SUPERFAMILY Ubiquitin-like 101 181 IPR029071 -
Lja1g4840 578 Pfam Phosphatidylinositol 3- and 4-kinase 269 526 IPR000403 -
Lja1g4840 578 SUPERFAMILY Protein kinase-like (PK-like) 412 573 IPR011009 -
Lja1g4840 578 Gene3D - 104 184 - -
Lja1g4840 578 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 4 2 575 - -
Lja1g4840 578 SMART ubq_7 105 178 IPR000626 GO:0005515
Lja1g4840 578 SMART ubq_7 29 100 IPR000626 GO:0005515
Lja1g4840 578 Gene3D - 26 103 - -
Lja1g4840 578 ProSiteProfiles Ubiquitin domain profile. 27 100 IPR000626 GO:0005515
Lja1g4840 578 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 260 560 IPR000403 -
Lja1g4840 578 SUPERFAMILY Ubiquitin-like 34 102 IPR029071 -
Lja1g4840 578 CDD Ubl_ubiquitin_like 107 174 - -
Lja1g4840 578 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 575 IPR044571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4840 Lja-Chr1 65960802 65964275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4840 1 575 Acyl Lipid Metabolism Gene Families AT5G24240 62.392 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4840 - - gmx:100812724 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1765 3 19829818 19832935 Lja1g4840 1 65960802 65964275 ECH
Lja1g0087 1 735377 738453 Lja1g4840 1 65960802 65964275 ECH
Lja1g4840 1 65960802 65964275 Lja1g4840 1 65960802 65964275 ECH