Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0708 ATGGTCTTGCAGAAGAGATTAGACTACGGATTTAATGGCTATCAGGCACCGGCCACACCCCGAGCTGTCCGATCAACTAGGAGGAGGGCTAAATTTCAAACAAGAGCACAAGACAATGAAATGTGTGCATTTGAATTATTGGCCACTGTAGCTGGCAAATTTCTGCTCGAGAAAGAGAATACAGCCCTGTACAGTGAAACATCATCTGAAAAGGATCAGCATGAATTCCCACATCAAGATGAGGGCCATTCTTCAGGCACTGGCAAAATCCATGACAAAATTGAAGACAATGATAGCCAAGTTAGATTAGGTTCTTCTGGGTGTCCAGAGGATAGTCTTTTCAAGTTAGATGGTGATACAAGTAAGGTAAAGGATGAGCTGCATAAGTTTGAGAAGGTGCCAATCGGCAACGGGGTTGAGTTGTGCAGTTTTGAGGATCTGTTGGGTGGAAATCCTCCTGCACTGATCAGTTTAGGTGACAACACCAAATTGTCTGGGTCTAATGACATTCCCTGTAGCTCATTGTCCCATGGTAGTGACAATGTACCAGTAGTTAGTAGAGATGATGACGAAAACTCTTCTTGGTGTACTCACCCTAGTACAAAAACCAAGTCCTTTAGGCCAAAGAAAGGTATATATGATAATAGAATAGGGAAAATATTGGCTTCTAAATTTCGAAAAGTTGCGGAAAAATCAAAAGATGTTACACTTCCTAACAATGATGGCAAATTGAAGCGAACTTACTGCAGTAAGAACTTCTATAGACGCCAAAGTTCTCAGATGAATGTTCCTTTCAAAAAGAGGAAGCTACTTAAATGTAGATCCATTTCAAACTCCAATCGATTTATCAGTAGGGGCATTTATTATTCACCTGAGAATGGTATGAATCAAGATGCTTTTGGTTCATCTCCTAGGATGGACAAAGTGAAGCTTAGGATCAAGTCGTTTAGAGTGCCAGAGCTTTTTATTGAGGTTCCAGAAACTGCAACTGTTGGGTCCCTGAAGAGGACAGTGATGGATGCATTGACTGCTGTACTTGGAGGTGGATTAGGCATTGGAGTTGTTCTCCAGGGAAAGAAAGTTAGAGATGACAGTATAACTCTACTTCAAACAGGAATTTCTCAAGATAAGCAGCTTGATGCTCTGGGTTTCACACTGGAGCCTAATTCTTCACAAAGCCTACCAATTGTATGTGCTGCACAGTCTCTACATGATCCTATTGCAGACACTCCTCAACCTGTACTAAGGTATCCTTCCAGTCCAGCTGTAATTCATCGCAGGACTCAAGACAATTCTGACTTGTTACTTGACCATCAATTAACCACTTTAGGAAACCTTGTTGAAAATGACCATGGTTCAGTACCTTTAGCTATCAACTCATCTGTTGACAAAGGTAGGACCGATTCCAAAGAATTGATTACTGTTCCTGAAATGGATAAGGAAGAACTAGCTAGTGCAACTGTGCTCCAGAAGTCAATACGAGCTGAGAATGTTCAACGCCGAATTCGTAGGCCTTTTTCTGTGGGTGAAGTAGAAGCACTGGTTCAAGCAGTCGAGGAACTGGGAATTGGAAGGTGGCGGGATGTTAAACTTCTTGCTTTTGAAAATGCAGAGCATCGGACATATGTGGATTTGAAGGACAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGAGGAGAGCCTGTTCCCCAAGAACTTTTGGACAGGGTCCTAACTGCACAAGCATATTGGTCTAATAAGGAATTGTCACCTTCACATGGCTTTGTAGATGGAGTGGGGGCTTTGGTTTCTGACCTTTATTATTAG 1824 0.4227 MVLQKRLDYGFNGYQAPATPRAVRSTRRRAKFQTRAQDNEMCAFELLATVAGKFLLEKENTALYSETSSEKDQHEFPHQDEGHSSGTGKIHDKIEDNDSQVRLGSSGCPEDSLFKLDGDTSKVKDELHKFEKVPIGNGVELCSFEDLLGGNPPALISLGDNTKLSGSNDIPCSSLSHGSDNVPVVSRDDDENSSWCTHPSTKTKSFRPKKGIYDNRIGKILASKFRKVAEKSKDVTLPNNDGKLKRTYCSKNFYRRQSSQMNVPFKKRKLLKCRSISNSNRFISRGIYYSPENGMNQDAFGSSPRMDKVKLRIKSFRVPELFIEVPETATVGSLKRTVMDALTAVLGGGLGIGVVLQGKKVRDDSITLLQTGISQDKQLDALGFTLEPNSSQSLPIVCAAQSLHDPIADTPQPVLRYPSSPAVIHRRTQDNSDLLLDHQLTTLGNLVENDHGSVPLAINSSVDKGRTDSKELITVPEMDKEELASATVLQKSIRAENVQRRIRRPFSVGEVEALVQAVEELGIGRWRDVKLLAFENAEHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAQAYWSNKELSPSHGFVDGVGALVSDLYY* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0708 607 SUPERFAMILY Ubiquitin-like 307 392 IPR029071 -
Lja3g0708 607 CDD SANT_TRF 504 554 - -
Lja3g0708 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 499 557 IPR017930 -
Lja3g0708 607 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 587 IPR031105 -
Lja3g0708 607 Gene3D - 491 593 - -
Lja3g0708 607 SUPERFAMILY Homeodomain-like 504 584 IPR009057 -
Lja3g0708 607 ProSiteProfiles Myb-like domain profile. 498 553 IPR001005 -
Lja3g0708 607 SMART sant 502 555 IPR001005 -
Lja3g0708 607 MobiDBLite consensus disorder prediction 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0708 Lja-Chr3 7088659 7093247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0708 - - lja:Lj3g3v3211100.1 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0708 3 7088659 7093247 Lja3g0708 3 7088659 7093247 ECH
Lja3g0708 3 7088659 7093247 Lja6g0519 6 12501713 12506815 ECH
Lja1g2166 1 25187437 25192749 Lja3g0708 3 7088659 7093247 ECH
Lja3g2766 3 40942003 40947793 Lja3g0708 3 7088659 7093247 PCT