Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2766 ATGGTGTTGCAGAAGAGGCTAGATCATAGATTTAATGGCTATCAGGTGCCAACCAAGCCCCGAGCTACCCGCTCCCCTAGGGGGAGGGCTACATTTCAAAGAAAGGTGGAAGACAACCAAATGCTCGCATTTGAGTTATTGGCCACCGTAGCTGGCGATTTACTGCAAGAGAATCAGAATCCTACCACTTCTTGTAATGGATCATCAGAAAAGGATCAGGGTGGATTTGTTAAAGAAGAAAACCAAGATGCAAATAAACCATTCAAAGCTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATATCAACAATTTGTTAAAGAAGGGTGTCTAGATGCAAATATGCCATTGAAAGCCGAGCTCTCTGATGAGGGAAATAGTGATAGAAAATCTATCTCTAATCTATCTTCAGAAGTGTACGATAAACATTGCTGTATGAAGGAATACCTGCATCCTGAAATTGATGGTCATTCATTCATTACTTCTACAGTTACAAGTTCTAGTTGCTCGGAGAGGTTTTTGGCTGAGATGGTGGTGGATGAAAGAAGGCATAACGAAATGAAAAAATCTGCTTGCAAAGTTGAATTAGGTTCCACTGGATGTCCAAATAGTATTGGTTGCAAGTTAGATGATGATGCAAGTAAAGTAAATGACGAGCTGCATAAGCTTGAGAAAGTACCAATTGGTACTGGGACTGGTGTGTGCTGTTTTGAGGATCCCTTGGATGAAAAACCTCCGGCACTAATCAACACCAAGTTGTCTGGGTATGACGACAATGTACCAGTAGTTAGTAGAGATGATGACGAAAACTTTTCCGGGTGTGCTCACCCTAGTACCAAAACAAGGCCCTTTAGGCCAAGAACATGTATAGTTGAACAAAGAATAGGTAAAAATTTGGCTTCTAAATATCAAAAGGTTGCTCAAGAATCAAAGCATGATACACTTCCTAACAGTGTTTCTGATGGAAATTTGAAGCCAGTTTATAGCAGTAGGAGGGACTATTATAAACGCCAAAGATCTGAAATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAACTGCAGCTCTGGTTCAAATTCTAACGGATTTATCAGAAGTGGCCGCACTTATAAGTCACCTGAGAATGACATGAATCAAGGTGTTTCTTATTCATCTTCTGGGATCAGCAAAGATCCTGGAATGGAAACACATAAGCACTCTGCATTACAATCTAGAAATCCTCATGTGAAACTTAGGATCAAATCTTTTAGAGTGCCAGAGCTTTTTATCGAGATTCCTGAAACTGCAACCATTGGGTCCTTGAAGAGGGCAGTGATGGAGGCAGTGACTGCTGCACTTGGAGGCGGATTGCGAGTCGGTATGATTTTCCATGGAAAGAAGGTTAGAGATGACAGCAAAACTCTAATTCAGACTGGAATTTCTCATGATAACCAGCTGGATACTTTGGGCTTCACCCTGGAGCCTAATTCTTCAAAAAATATACCACTGACATGTGCTGCAGATTCTCTCCATGTTCTTGGTGGGGACATGCCTCAGTCTTTAATAGGGCATCGCTCCAGTCCAGCTGTAACTCATGAGAGGATTAAGGGCTTCTCTAACATGTTACCTGAGCATCAAGTAGCCAGTTTAGGTAATTTTGTTGAAAGTGATCATGATTCAGCACCTTCTCCTATCAACACATCAGTTGAAAAAAACTTGAAAGATTCTAAAGAACTTGTTACTGTTCCTGAAATGAGTAAGGATGCACTAGCTGTGCTACCTGTGCACCAGAAATCAAAGCGAACTGAGAATGTTCAGCGTCGAATTCGTAGACCTTTTTCTGTTGCTGAAGTGGAAGCACTGGTCCAAGCCGTTGAGAAACTGGGAACTGGAAGGTGGCGTGATGTTAAACTTTGTGCTTTTGATGATGCAAAGCATCGGACATACGTGGATTTGAAGGATAAATGGAAAACATTGGTGCACACGGCAAGAATATCACCTCAGCAGAGGAGGGGGGAGCCAGTTCCCCAAGAACTTTTGGACAGGGTCTTAACTGCCCATGCTTATTGGTCCCAACAGCAGAGTAAGCAACAGCCAGAAACTTGCCTTCTCCTTCAATGA 2100 0.42 MVLQKRLDHRFNGYQVPTKPRATRSPRGRATFQRKVEDNQMLAFELLATVAGDLLQENQNPTTSCNGSSEKDQGGFVKEENQDANKPFKAELSDEASCDRRYQQFVKEGCLDANMPLKAELSDEGNSDRKSISNLSSEVYDKHCCMKEYLHPEIDGHSFITSTVTSSSCSERFLAEMVVDERRHNEMKKSACKVELGSTGCPNSIGCKLDDDASKVNDELHKLEKVPIGTGTGVCCFEDPLDEKPPALINTKLSGYDDNVPVVSRDDDENFSGCAHPSTKTRPFRPRTCIVEQRIGKNLASKYQKVAQESKHDTLPNSVSDGNLKPVYSSRRDYYKRQRSEMNIPFKKRKLFNCSSGSNSNGFIRSGRTYKSPENDMNQGVSYSSSGISKDPGMETHKHSALQSRNPHVKLRIKSFRVPELFIEIPETATIGSLKRAVMEAVTAALGGGLRVGMIFHGKKVRDDSKTLIQTGISHDNQLDTLGFTLEPNSSKNIPLTCAADSLHVLGGDMPQSLIGHRSSPAVTHERIKGFSNMLPEHQVASLGNFVESDHDSAPSPINTSVEKNLKDSKELVTVPEMSKDALAVLPVHQKSKRTENVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFDDAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQSKQQPETCLLLQ* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2766 699 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 698 IPR031105 -
Lja3g2766 699 SMART sant 602 655 IPR001005 -
Lja3g2766 699 CDD SANT_TRF 604 654 - -
Lja3g2766 699 MobiDBLite consensus disorder prediction 384 406 - -
Lja3g2766 699 MobiDBLite consensus disorder prediction 58 85 - -
Lja3g2766 699 Gene3D - 591 695 - -
Lja3g2766 699 PANTHER TELOMERE REPEAT-BINDING PROTEIN 2-RELATED 1 698 - -
Lja3g2766 699 ProSiteProfiles Myb-like domain profile. 598 653 IPR001005 -
Lja3g2766 699 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 599 657 IPR017930 -
Lja3g2766 699 SUPERFAMILY Homeodomain-like 604 685 IPR009057 -
Lja3g2766 699 SUPERFAMILY Ubiquitin-like 404 492 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2766 Lja-Chr3 40942003 40947793 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2766 - - gsj:114374220 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2766 3 40942003 40947793 Lja3g0708 3 7088659 7093247 PCT