Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2166 ATGGTGTTGCAGAAGAGGTTGAACTACGGTTTTGATGGCTATCGGGCACCTTCCATTCCTAGGGCTTCAAGATCTGCTAGGGGGAGGGGTACAATCAGGAAGAAGCCTGACAGCAGTCAGATACAGGCATTTGAAATTTTGGCTAGTGTAGCTGGAAACTTTTTGCAGCAGAATGAGAGTTCCATTCCTGATAATGCTGCTGATTATGCAAAAGATCCTCACTCTTTTGCTGGTACTAACATAAAGGACAAACAAGAGCATGAAGCAGGTTTATTTAATGGGGATCTATTTGAGCATGGGAATTGCAGTGGAATTTCCTCTGCATGTATCCCTAGTTTACAAGGGAAACATGATAACCAAAGACTCTTGGATGATTCATCTATTCTTGGCAATGATCTTGAAGGCCAAGGACAGAATGTCCTTGAGAGGGAAGATGAACGGGTAAAAGGGAGAAAAACAAACGAGAAAATCATCCGCATCAAGGGAAGTTCTAAGGGATTAACAGAACCGAGCCATAGAGCATCAAAAGATTGTAGTTCAGAAAATTTTGTGGGAAAGCCTTCATTGGAGAATCTTGATTCTTTACCCAATGGTTCCACTTCTAGGAAATTAGTTACTAGAGATGATGACGAAAACTTTGTTACGTGCACTAAACTCAGCTCCAGGAATAACATATCTGGCCCACTACCAGATGTGTTAAAATTCAAGGATGCAAGTCCTTTTACAAATGATGAGAACAATAGTAGGGACAATTCTGTATTTGAAATTTCACAAAGAATGTATCCATTTAAGAAGAGGAAGTTCTTCCATCTGGCCTCATCAGCTGCATCTGATAGAGGCTCACACTGTCAAGGCATATTTGATTCTTCTGACACCCGGGTTAATGGCATAAACGAATGCACAGCAATTGAAGAATCATCCTCAGAAGCTGGTCAACAAGGACATCATGGGTCCAGGGGTTGTAACGTGAAGCTTAGCATAAAATCCTTTAAAGTCCCTGAGCTTTTCATTGATATACCTGAAACCGCAACTATCGGTTCACTGAAGAGGACAGTGATGGAGGCTGTGACAACTATACTTGGAGATGAACTACATGTGGGAATCCTTCTTCAGGGAAAGAAGGTCAGAGATGACAGCAAAACTCTAATCCAGACTGGGATATCTCAAGACGACAAACGTCATAGGTTGGGGTTTATGTTGGAGCCGAGACATCCTCGAATTTCTCCTTCTTCATACAATGAAGACCCTTGTCTTCTTAACCCCGGTTCACAACAGAAACTATCCAAGCAATCAACATCTTTAATGTTACAACAAGGACCATATAATGTATCCCAAGAACGTTCGCTGATCAAAATTGAAAATTGTGCTGAAGGTGATCTTAATATGGTCTCCTCTCTAGCAGATACTTCAGCTAACAATAACATGTCAAAGTGTCGCGCTCTGGTAGCAGTTCCTGCCATTAACATGAATGCGTTAGCTGTGGTTCCATTCCGCCGCAAATCTGGGAATCCTGACTATGCACAGCGCCGAATCAGGCGGCCGTTCTCTGTTTTAGAAGTCGAAGCATTGGTTCAAGCCGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTCAAACAACGTGCGTTTGACAATGCAAAGCATCGAACTTATGTGGATTTAAAGGATAAGTGGAAGACATTGGTGCACACAGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTTCTGGACAGGGTCTTAGCTGCCCATGCCTACTGGTCTCAGCAACAATGTAAGCACCAACTTAAACCTCTGTGA 1815 0.4298 MVLQKRLNYGFDGYRAPSIPRASRSARGRGTIRKKPDSSQIQAFEILASVAGNFLQQNESSIPDNAADYAKDPHSFAGTNIKDKQEHEAGLFNGDLFEHGNCSGISSACIPSLQGKHDNQRLLDDSSILGNDLEGQGQNVLEREDERVKGRKTNEKIIRIKGSSKGLTEPSHRASKDCSSENFVGKPSLENLDSLPNGSTSRKLVTRDDDENFVTCTKLSSRNNISGPLPDVLKFKDASPFTNDENNSRDNSVFEISQRMYPFKKRKFFHLASSAASDRGSHCQGIFDSSDTRVNGINECTAIEESSSEAGQQGHHGSRGCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTTILGDELHVGILLQGKKVRDDSKTLIQTGISQDDKRHRLGFMLEPRHPRISPSSYNEDPCLLNPGSQQKLSKQSTSLMLQQGPYNVSQERSLIKIENCAEGDLNMVSSLADTSANNNMSKCRALVAVPAINMNALAVVPFRRKSGNPDYAQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQLKPL* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2166 604 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 604 IPR031105 -
Lja1g2166 604 SMART sant 511 564 IPR001005 -
Lja1g2166 604 MobiDBLite consensus disorder prediction 163 182 - -
Lja1g2166 604 CDD SANT_TRF 513 563 - -
Lja1g2166 604 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 507 566 IPR017930 -
Lja1g2166 604 Gene3D - 501 603 - -
Lja1g2166 604 SUPERFAMILY Homeodomain-like 513 594 IPR009057 -
Lja1g2166 604 SUPERFAMILY Ubiquitin-like 318 405 IPR029071 -
Lja1g2166 604 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 604 - -
Lja1g2166 604 ProSiteProfiles Myb-like domain profile. 507 562 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2166 Lja-Chr1 25187437 25192749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2166 - - gmx:100801280 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2166 1 25187437 25192749 Lja6g0519 6 12501713 12506815 ECH
Lja1g2166 1 25187437 25192749 Lja1g2166 1 25187437 25192749 ECH
Lja1g2166 1 25187437 25192749 Lja3g0708 3 7088659 7093247 ECH