Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0519 ATGGTGTTCAAGAAGAAGGCAGATTATGGATTCAACGGCTTTCGAGTCCCTGTTATTCCTAAAGCTCCTAGATCTGCGAGAAGGAGGGGTCCATTTAGAAATTCCGTTGAGGATGGTCAAGCATGTGCTTTCGACCTATTGGCATCTTTAGCTGGAAAGTTGTTACAGGAGAGTGAAAGCTCTGCTGCTAGCAATGCATCTGAAGGAAATCTTCAGCCTGCTGTTAAACCATTGACAATGGAGGGAATTCGTCAGGGAAATTGTGCAGAGAGTGTTGTTAAGAATGAGGTAGCCTCTCAAAACAGTAGTCAGAAACCTCTTCTGCATTCCAAGCCTGATTGTTTAGTAGGATATGTTTCTGTAAATAATAGTTCTGACTGTTTGGAAAAAGTCGAAACTGGTGTGAAGACTGAGGCTTTCGACCGGGATAAAAAATATGTGCATTATTCTAATAGATTAGTGGAAATACATGAAAAATTTAAGGATTCTTGTGATGGTATAATAAAGAATGGATTTAGACAGGGAAAAGAAGCTGGCAGTTCAGACTTTCAGGGATCAACTTTGGGTGATAAATATGGTTTGAAGGACCAATTAGATTTGTATGCTACTCCTGCACTAATTGACTCAAAAGTTAATGTTAAATATCCACGTAAATCTTTTCCCAGTGCTTCTTTTTCCAAGCTAGGGAATGGTAGTAAGTTAGAATTTAGAGATGATGACGAAAACCTTTTAAGGTGCAAAAGACTTTGCACAAAATCAAAGGCCTTTAGGTCTCCACGACGCATTGCCCACCGAAGAATCAAGAATCTGCTGTCGTCCAAATACTGGAAGGTTGCTCCAAAGCTGAAGGAATGTGATCTTCCTGTATCTGATCTAGGAGTACCTCTTTATCGGAAGAGGAAGGCTTGTTACGGATTTGAAAGATCCCAGCGCAGCACTATTGCTAAGAGGAGGAAATTCTTTGACCACGTTTCGGGGGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCACCTATGAAAGGAGTGGATGGAGACAAACCTTGCTCATCTGCAAAACTTCTTGTCCCACAGGATTCTCATGTGAAATTTAGCATTAAGTCATTCAAGATACCAGAGCTTTATATTGAGGTTCCTGAAACTGCAACTGTCGGTTCACTAAAGAGGTCGGTCATGGAATCTGTGATGGCTATACTCGGAGGTGGTGTGCATGTTGGTGTAATTCTTCAGGGGAAAAAAGTTAGAGAGGACAATAGAACACTTATGCAGACTGGTATATCTTGCAAAGAAAATCTCGATACCCTTAGTTTCACGTTGGAGCCCAGTTCTCTTCTAGCTTCTCCAGCTGTTTGTGTTGGTGGCGGTCCTTCTTCCCAATGCGAAACATTCGAACCTATTGGGTCCCCCGAAACTCCTGTCCTAGATTCAGGGATTACTGGTACCTTACTTGACCCGTCCTTGCTGACAAATCCGAGCAACCTAGTTGAAAGTAACCATGAGTCCACTTCTTCCCCCACTGACACAACAGTTGACAATATAACACCAGATTCCAGAGCGATAGTTGCCGTTCCAACTAGTGCTGAAGCATTAGCTGTGGTTCCTGCAAGTCAGAAGACCAAGCGCGCTGATTATGCACAGCGTCGGACCAGGAGGCCATTTACTGTGTATGAGGTAGAAGCACTTGTTCACGCAGTTGAAGAACTTGGAACTGGAAGGTGGCGTGATGTTAAGTTGCGATCTTTTGAGAATGCAGACCACAGGACTTATGTAGACTTAAAGGATAAATGGAAGACATTAGTGCACACTGCAAGCATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTACCCCAGGAGCTATTAGATAGGGTTTTGGCGGCACACTCTTACTGGTCTCAGCACCAAGCCAAGCAACATGGCAAGCCCCAAGTTGGACCTGGCACCTTGAAGATTGCAGAAGCTGCACCTGAAAGATCATGTTTGTTGAAGGTGTAG 2001 0.4363 MVFKKKADYGFNGFRVPVIPKAPRSARRRGPFRNSVEDGQACAFDLLASLAGKLLQESESSAASNASEGNLQPAVKPLTMEGIRQGNCAESVVKNEVASQNSSQKPLLHSKPDCLVGYVSVNNSSDCLEKVETGVKTEAFDRDKKYVHYSNRLVEIHEKFKDSCDGIIKNGFRQGKEAGSSDFQGSTLGDKYGLKDQLDLYATPALIDSKVNVKYPRKSFPSASFSKLGNGSKLEFRDDDENLLRCKRLCTKSKAFRSPRRIAHRRIKNLLSSKYWKVAPKLKECDLPVSDLGVPLYRKRKACYGFERSQRSTIAKRRKFFDHVSGVTSDGGFSSESVSNSPMKGVDGDKPCSSAKLLVPQDSHVKFSIKSFKIPELYIEVPETATVGSLKRSVMESVMAILGGGVHVGVILQGKKVREDNRTLMQTGISCKENLDTLSFTLEPSSLLASPAVCVGGGPSSQCETFEPIGSPETPVLDSGITGTLLDPSLLTNPSNLVESNHESTSSPTDTTVDNITPDSRAIVAVPTSAEALAVVPASQKTKRADYAQRRTRRPFTVYEVEALVHAVEELGTGRWRDVKLRSFENADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLAAHSYWSQHQAKQHGKPQVGPGTLKIAEAAPERSCLLKV* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0519 666 SUPERFAMILY Homeodomain-like 554 635 IPR009057 -
Lja6g0519 666 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 548 607 IPR017930 -
Lja6g0519 666 CDD SANT_TRF 554 604 - -
Lja6g0519 666 Gene3D - 541 645 - -
Lja6g0519 666 MobiDBLite consensus disorder prediction 494 515 - -
Lja6g0519 666 ProSiteProfiles Myb-like domain profile. 548 603 IPR001005 -
Lja6g0519 666 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 656 IPR031105 -
Lja6g0519 666 SMART sant 552 605 IPR001005 -
Lja6g0519 666 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0519 Lja-Chr6 12501713 12506815 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0519 - - gmx:100795471 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0519 6 12501713 12506815 Lja6g0519 6 12501713 12506815 ECH
Lja1g2166 1 25187437 25192749 Lja6g0519 6 12501713 12506815 ECH
Lja3g0708 3 7088659 7093247 Lja6g0519 6 12501713 12506815 ECH