Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0594 ATGCGAAGACCAAGAACCATGAGACCAAACATCGTTTCTGAGGCAGGGGTGTCTACTAGGGTGAATCAATGGTGGGAAAGCATTCCATTCCTCACTTCTGCAGTGGTGGTTGTGTGTGGAGCAATTTACTTGGTCTGTCTTTTGGTTGGATATGATTCCTTTGCTGAGATATGCTTCTTGCCTTCTGCTGTTGTGTCACGCTTTCAAGTTTACAGGATTTATACTGCCATTCTTTTCCACGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGCTCGAGAGGATTATGGGCTCAGTTCGCTTGCTATATGTCACTATTTTGTTGGCTACAAGCAATGCTATATTCCATGTTCTCATAGCGCTGCTGGTGACATACAATCCTTTTGTTAAATTTGATTACCTCATGAATGAGTGTGCGATTGGTTTCTCAGGAGTTCTATTTTCCATGATTGTTATAGAGACTAGCCTGAGTGGAGTTCAATCCAGGAGTGTGTTTGGGTTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTTGTATTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAAGCCTCTTCCTTGCTTTCATCATGTGTAAGACGGCCTAAATTTATTGTTTGCACTGGTGGAAATCCTTCTGGTTACATCCCTACACATACTAGCCAAAATTCAACAACCAGTGGATTACTCTCTGGAAATATTTGGAGGAACCTATCATCATTGATGCCTCAAAGGGAAGTGTCTGCTCAGTCAGCTGAGGACAGCAGGTTCCCTGGTGCGGGAAGGACCCTCGGTTCTAGTCAAGGTCAAATGGCTTCTGGTATTCAGTCAAATTCAAATCTTCAAGCTAGACTCTTGGAGGATAGCAGTCCAAATCAGCCTTCAGAAGGAAGGCATGCAGTTGATAATGCTGCTACAGCAGCTGCAGGTGTTCCACATCATCAGGCTGCAGTTGTTTCAGAGGAAGAGATTAAAAAGCTTGTAGCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCACTGGCGGCTGCTGATGGTGATCTTAACGTGGCAGTGGAAATACTCATGAGCCAGCAGGTAGCTACAAGAATGGATAATCAGAAGGAAACGAGTACGCATTTTGAGACGTTCACCTGGAGAATTGAAAACTTCTCAAAGCAAAAGACCAAGAATCTACAATCCAAGGCTTTCCGAATCGCAGGTTATAAATGGCGGATTCTTCTGTATCCATTGAGGAAAAACGTTGACCATTTTTCATTATATTTGATGGTTGCGGATTCTTTACCAGCTTATGGATGGAGCAGAAACACGTATTTCAAGTTGGCTCTGGTTAATCAGTTGGATGGCAACAAGTCTGTTGTAAAGGAGACTCATCAGAAGTTCAATGGTGGATATCGCAGCTGGGGCTCATCATTCATGAATCTCAGTGACTTCTATGACTCTAAACAAGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATATTTGTGTTTCCAATGTTAGCGCTATTCAATCTACCAGCTTTAAAAAGGTTACTCCAACCCATGACTCTGAATTAGGTGATCAAGAAACAGAAACATCAGAAGAAAGTGAGACACCTAGTTCCTCAACCTATGGGTCTAGTCAAACGGAACAGGAAGTTCAAGTTTCAGATTTGACTCTGAGAGACCTCCTAGATTTGGAGAATTTAGGAGCAGAAGAAGAAGCTTTTGTTCCACTGTTGGAAGAGGCCTGCACTTGGCACCCTTCCCTGATAAGGAGCCAGAGTAAAAGAACTAGCAGGTTCAAACTATGGGCATTCACATCTTTGGGTCAAGTTCTACATATCCTCAAGACAAGTAAAGTGAAGGATATGAATGAAGATGCCATCAATCACCTTCAAAGTTTGTGGGAGGAGCTTGTTAAGGCTTCTGGATTTGACTTGGCTTGGCTGGAGCCTTATGTTGAATCTGCATTGGGTTTGAAAGAACATTTGGAAAGAACAGTGGCAGTGAATAAGCTGAAGGATAAGGTGGTTGATGTGGAGATTAAAATGAAGAAGCTGAGGGGTGAATTGGCTGCTGCAGAAGCTGAGTTTGAGAGTGCAAGGAGAGACTTGGCTGAGGCAAGAAAAGGTTTCGTAGAGATTGATTTGAATGCTGAGTTGGTGGTTATACAAATGGCGGATCAACAATCAAGGGCTGATACGTTTGAGAAATTTACGTGGAAAATTGAAAACTTTTCTCACTTGGACTCCAACAAGCTTTACTCTCACACTGTTGTCATTGAAGGCCAACCATGGAGGATGCTTCTGTTTCCACGTGGGAACAAAGTGAACTACTTATCAATTTATTTGAATGCTGTGAACTCTGATAAATTGCCCTCTGGATGGACCAGAGATGTGAAATTCAAGTTGACTGTATTTAATCAGGCCAATAGCAACATGAGCATCACAAGAGAGGCCAAACGCAGGTTCAATGCAACGAAGAGTGAATGGGGTTTCACCTCTTTCATGCCTTTAGATGAACTTCATGATCCTTGCAAAGGGTTTCTTGTGAAAGATACTTGTATTATTGGTGCAGAGATTTCTGTCACTAAGTCAAAACAAGAGAACAAAGTGAATCAAGCTGTTTTAAGCCAATCTGGACACAAGGAACTGGCATTGTTCTCAGCTTTGAGCGGTGATGATGAGCTTGTGGATTTCTTGGGTTTATGCAAAATAGAAAAAGCTTTTGTCCCACTACTAGTGGAAGTGTGTTCTAAGCATTCGTCACTGATTGAGTGCCAAAAGAAGAGAAGTCCTAGGTTTACTGAATGGGCGTTCACGGCTTTGGGAAGAGTTCTGTATTTCCTCAAGACTAGAAAGGTGAAAGATATGAATGAAGCGGTTTGTAAGGATCTTCAAAGTTTATGGGAGGAGCTTGAGACATTTAAGTTTGATCTGAGTTGGCTGAAGCCCCATATTCAATTTGCCTTAAGGATGGAAAGTTATGTGGAGAAAGTAGTGGGGGCGGAGAAGCTGAAGGAGAATGTGGTGGTTTTGGAGATGGAAATGAAGGTGCTTGAAGTCAAGCTGGCAGTTGCTAAGGCGGATCTTGATAGAGTGTCGTATGTCTTGGAAGAAGAAGGCTTCCATGAGATAGATTTGGATGTTGAATTAGGATATGGAATTGGGTGTTGA 3291 0.4248 MRRPRTMRPNIVSEAGVSTRVNQWWESIPFLTSAVVVVCGAIYLVCLLVGYDSFAEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSNAIFHVLIALLVTYNPFVKFDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIEASSLLSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTTSGLLSGNIWRNLSSLMPQREVSAQSAEDSRFPGAGRTLGSSQGQMASGIQSNSNLQARLLEDSSPNQPSEGRHAVDNAATAAAGVPHHQAAVVSEEEIKKLVAMGFDRTQVEVALAAADGDLNVAVEILMSQQVATRMDNQKETSTHFETFTWRIENFSKQKTKNLQSKAFRIAGYKWRILLYPLRKNVDHFSLYLMVADSLPAYGWSRNTYFKLALVNQLDGNKSVVKETHQKFNGGYRSWGSSFMNLSDFYDSKQGYLVNNTCIIEAHICVSNVSAIQSTSFKKVTPTHDSELGDQETETSEESETPSSSTYGSSQTEQEVQVSDLTLRDLLDLENLGAEEEAFVPLLEEACTWHPSLIRSQSKRTSRFKLWAFTSLGQVLHILKTSKVKDMNEDAINHLQSLWEELVKASGFDLAWLEPYVESALGLKEHLERTVAVNKLKDKVVDVEIKMKKLRGELAAAEAEFESARRDLAEARKGFVEIDLNAELVVIQMADQQSRADTFEKFTWKIENFSHLDSNKLYSHTVVIEGQPWRMLLFPRGNKVNYLSIYLNAVNSDKLPSGWTRDVKFKLTVFNQANSNMSITREAKRRFNATKSEWGFTSFMPLDELHDPCKGFLVKDTCIIGAEISVTKSKQENKVNQAVLSQSGHKELALFSALSGDDELVDFLGLCKIEKAFVPLLVEVCSKHSSLIECQKKRSPRFTEWAFTALGRVLYFLKTRKVKDMNEAVCKDLQSLWEELETFKFDLSWLKPHIQFALRMESYVEKVVGAEKLKENVVVLEMEMKVLEVKLAVAKADLDRVSYVLEEEGFHEIDLDVELGYGIGC* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0594 1096 CDD MATH 776 899 IPR002083 GO:0005515
Lja1g0594 1096 SMART uba_6 362 399 IPR015940 -
Lja1g0594 1096 SMART math_3 776 880 IPR002083 GO:0005515
Lja1g0594 1096 SMART math_3 418 520 IPR002083 GO:0005515
Lja1g0594 1096 MobiDBLite consensus disorder prediction 303 317 - -
Lja1g0594 1096 Pfam MATH domain 781 901 IPR002083 GO:0005515
Lja1g0594 1096 Pfam MATH domain 423 539 IPR002083 GO:0005515
Lja1g0594 1096 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Lja1g0594 1096 ProSiteProfiles MATH/TRAF domain profile. 416 539 IPR002083 GO:0005515
Lja1g0594 1096 CDD MATH 418 539 IPR002083 GO:0005515
Lja1g0594 1096 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Lja1g0594 1096 Coils Coil 708 749 - -
Lja1g0594 1096 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 360 400 IPR015940 -
Lja1g0594 1096 SUPERFAMILY TRAF domain-like 776 904 - -
Lja1g0594 1096 MobiDBLite consensus disorder prediction 289 317 - -
Lja1g0594 1096 MobiDBLite consensus disorder prediction 556 592 - -
Lja1g0594 1096 SUPERFAMILY UBA-like 355 402 IPR009060 GO:0005515
Lja1g0594 1096 SUPERFAMILY TRAF domain-like 418 543 - -
Lja1g0594 1096 MobiDBLite consensus disorder prediction 573 592 - -
Lja1g0594 1096 Gene3D - 22 219 IPR035952 -
Lja1g0594 1096 PANTHER DER1-LIKE PROTEIN, DERLIN 10 401 - -
Lja1g0594 1096 ProSiteProfiles MATH/TRAF domain profile. 774 899 IPR002083 GO:0005515
Lja1g0594 1096 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 403 547 IPR008974 GO:0005515
Lja1g0594 1096 PANTHER RHOMBOID-LIKE PROTEIN 15 10 401 - -
Lja1g0594 1096 Coils Coil 1041 1061 - -
Lja1g0594 1096 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 772 915 IPR008974 GO:0005515
Lja1g0594 1096 Pfam UBA/TS-N domain 362 397 IPR015940 -
Lja1g0594 1096 CDD UBA_At3g58460_like 363 398 - -
Lja1g0594 1096 Gene3D - 333 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0594 Lja-Chr1 5417342 5439401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0594 - - gmx:100805745 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0594 1 5417342 5439401 Lja5g1063 5 10730519 10752213 ECH
Lja1g0594 1 5417342 5439401 Lja1g0594 1 5417342 5439401 ECH
Lja1g0594 1 5417342 5439401 Lja6g1730 6 44394337 44424129 ECH
Lja1g0594 1 5417342 5439401 Lja5g2370 5 43979096 43980687 PCT
Lja5g2364 5 43851336 43852986 Lja1g0594 1 5417342 5439401 PCT